miRNA display CGI


Results 1 - 20 of 70 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13007 3' -55.4 NC_003387.1 + 3388 0.66 0.697879
Target:  5'- cCGAcGCUCAGCuuGCGCGCgaucaugcUCggGGCCg -3'
miRNA:   3'- -GCU-CGAGUCGuuUGUGCG--------GGa-CUGGa -5'
13007 3' -55.4 NC_003387.1 + 48262 0.66 0.697879
Target:  5'- gCGGGCUCGGCGGuCG-GCUC-GGCCUu -3'
miRNA:   3'- -GCUCGAGUCGUUuGUgCGGGaCUGGA- -5'
13007 3' -55.4 NC_003387.1 + 38987 0.66 0.697879
Target:  5'- uCGAGUugUCAaccugcGCAGGCugauCGCCCUGcGCCg -3'
miRNA:   3'- -GCUCG--AGU------CGUUUGu---GCGGGAC-UGGa -5'
13007 3' -55.4 NC_003387.1 + 26144 0.66 0.697879
Target:  5'- aCGAGC-CAGCAugcccGGCAcCGCCCgcaagGGCg- -3'
miRNA:   3'- -GCUCGaGUCGU-----UUGU-GCGGGa----CUGga -5'
13007 3' -55.4 NC_003387.1 + 3433 0.66 0.697879
Target:  5'- gCGuGCUCGGCGAGCAC-CUgggcGACCUu -3'
miRNA:   3'- -GCuCGAGUCGUUUGUGcGGga--CUGGA- -5'
13007 3' -55.4 NC_003387.1 + 27944 0.66 0.696785
Target:  5'- gGGGCUCGGUcgGgGCGCUCggcgugcucggcuUGGCCg -3'
miRNA:   3'- gCUCGAGUCGuuUgUGCGGG-------------ACUGGa -5'
13007 3' -55.4 NC_003387.1 + 10373 0.66 0.686916
Target:  5'- uGGGC-C-GCAAGCugGCCCgcaACCUc -3'
miRNA:   3'- gCUCGaGuCGUUUGugCGGGac-UGGA- -5'
13007 3' -55.4 NC_003387.1 + 35680 0.66 0.686916
Target:  5'- -uGGCUgAGCGGGCACGUgUgggGGCCg -3'
miRNA:   3'- gcUCGAgUCGUUUGUGCGgGa--CUGGa -5'
13007 3' -55.4 NC_003387.1 + 168 0.66 0.686916
Target:  5'- uCGcGCUCGGUcacgaaAGugACGCCC-GGCCg -3'
miRNA:   3'- -GCuCGAGUCG------UUugUGCGGGaCUGGa -5'
13007 3' -55.4 NC_003387.1 + 26595 0.66 0.686916
Target:  5'- gCGAGCggCGaCGGACGCGCC--GACCUg -3'
miRNA:   3'- -GCUCGa-GUcGUUUGUGCGGgaCUGGA- -5'
13007 3' -55.4 NC_003387.1 + 42354 0.66 0.686916
Target:  5'- gCGGGC-CAGCuuGCG-GCCCaGGCCc -3'
miRNA:   3'- -GCUCGaGUCGuuUGUgCGGGaCUGGa -5'
13007 3' -55.4 NC_003387.1 + 45863 0.66 0.675899
Target:  5'- gCGAGCUgCuGCGGcuGCGCGCCgC-GGCCg -3'
miRNA:   3'- -GCUCGA-GuCGUU--UGUGCGG-GaCUGGa -5'
13007 3' -55.4 NC_003387.1 + 1584 0.66 0.675899
Target:  5'- --cGUgaaAGuCAGACGCGCCCUGGCa- -3'
miRNA:   3'- gcuCGag-UC-GUUUGUGCGGGACUGga -5'
13007 3' -55.4 NC_003387.1 + 15444 0.66 0.675899
Target:  5'- aCGAGCgCGcCAG--GCGCCUUGACCg -3'
miRNA:   3'- -GCUCGaGUcGUUugUGCGGGACUGGa -5'
13007 3' -55.4 NC_003387.1 + 17077 0.66 0.65375
Target:  5'- uCGAGgUCGGCcaguGCcCGCCC-GGCCg -3'
miRNA:   3'- -GCUCgAGUCGuu--UGuGCGGGaCUGGa -5'
13007 3' -55.4 NC_003387.1 + 40179 0.66 0.652639
Target:  5'- uCGAGCccucgcagCAGCAgcagaccaacaugGACAacaaGCCgCUGACCUg -3'
miRNA:   3'- -GCUCGa-------GUCGU-------------UUGUg---CGG-GACUGGA- -5'
13007 3' -55.4 NC_003387.1 + 4424 0.66 0.650418
Target:  5'- cCGAGCUgGGCAAGgcguucgccgagccCGCGCCgaaGGCCg -3'
miRNA:   3'- -GCUCGAgUCGUUU--------------GUGCGGga-CUGGa -5'
13007 3' -55.4 NC_003387.1 + 36267 0.66 0.642639
Target:  5'- cCGGGCUguGgAuuAugGCgGCCCUGAUCUu -3'
miRNA:   3'- -GCUCGAguCgU--UugUG-CGGGACUGGA- -5'
13007 3' -55.4 NC_003387.1 + 484 0.67 0.631518
Target:  5'- gCGAGCUgCucgucGCGAuGCGCGCCCgcguggcGACCg -3'
miRNA:   3'- -GCUCGA-Gu----CGUU-UGUGCGGGa------CUGGa -5'
13007 3' -55.4 NC_003387.1 + 39274 0.67 0.628182
Target:  5'- gCGAGCUgGGCAAgcugcucgacgacgGCAaGCCCccGGCCg -3'
miRNA:   3'- -GCUCGAgUCGUU--------------UGUgCGGGa-CUGGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.