miRNA display CGI


Results 1 - 20 of 55 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13007 5' -56.5 NC_003387.1 + 39755 0.66 0.664533
Target:  5'- cGguGGccgcccGGUaCGAGCCGcCAGACGCCg -3'
miRNA:   3'- -CguCCcc----UCA-GCUCGGUcGUUUGCGG- -5'
13007 5' -56.5 NC_003387.1 + 21261 0.66 0.664533
Target:  5'- cGCGacGaGGAGUCGGGCaAGguGGCGCa -3'
miRNA:   3'- -CGU--CcCCUCAGCUCGgUCguUUGCGg -5'
13007 5' -56.5 NC_003387.1 + 45678 0.66 0.664533
Target:  5'- uCAGGGcGAGcggcCGGGCCuGCcguuGAACGCg -3'
miRNA:   3'- cGUCCC-CUCa---GCUCGGuCG----UUUGCGg -5'
13007 5' -56.5 NC_003387.1 + 35325 0.66 0.664533
Target:  5'- gGCAGuGGuGGG-CGGGCgAGgAgauuGACGCCg -3'
miRNA:   3'- -CGUC-CC-CUCaGCUCGgUCgU----UUGCGG- -5'
13007 5' -56.5 NC_003387.1 + 34947 0.66 0.664533
Target:  5'- aCAuGGGGA-UCGuuUCGGCcGACGCCg -3'
miRNA:   3'- cGU-CCCCUcAGCucGGUCGuUUGCGG- -5'
13007 5' -56.5 NC_003387.1 + 16061 0.66 0.664533
Target:  5'- cCAGGucGG-CGAGCCGGU-GAUGCCa -3'
miRNA:   3'- cGUCCccUCaGCUCGGUCGuUUGCGG- -5'
13007 5' -56.5 NC_003387.1 + 6955 0.66 0.65799
Target:  5'- aGCGGcGGGcAGgCGccacagcgcgcccucGGCCAcuuguGCAGGCGCCg -3'
miRNA:   3'- -CGUC-CCC-UCaGC---------------UCGGU-----CGUUUGCGG- -5'
13007 5' -56.5 NC_003387.1 + 12292 0.66 0.653622
Target:  5'- uCAGGccGGGcCGGGCCGGUu--CGCCg -3'
miRNA:   3'- cGUCCc-CUCaGCUCGGUCGuuuGCGG- -5'
13007 5' -56.5 NC_003387.1 + 13897 0.66 0.653622
Target:  5'- uGCGGcGGcucGUCGAGCCAGCuAACa-- -3'
miRNA:   3'- -CGUC-CCcu-CAGCUCGGUCGuUUGcgg -5'
13007 5' -56.5 NC_003387.1 + 30186 0.66 0.631752
Target:  5'- uCGGGcaaGGAGcagucgcCGAGCCGGU--ACGCCg -3'
miRNA:   3'- cGUCC---CCUCa------GCUCGGUCGuuUGCGG- -5'
13007 5' -56.5 NC_003387.1 + 4133 0.66 0.620813
Target:  5'- aGCGGcGGGcuuuugGGUCG-GCgaGGCGGGCGUCg -3'
miRNA:   3'- -CGUC-CCC------UCAGCuCGg-UCGUUUGCGG- -5'
13007 5' -56.5 NC_003387.1 + 23566 0.66 0.609883
Target:  5'- -------cGUCGGGUCGGCGAAUGCCg -3'
miRNA:   3'- cguccccuCAGCUCGGUCGUUUGCGG- -5'
13007 5' -56.5 NC_003387.1 + 2205 0.67 0.603333
Target:  5'- uCAGGGGugccucgugcucgccGGUCaggcGGCCAGCGucaGCCa -3'
miRNA:   3'- cGUCCCC---------------UCAGc---UCGGUCGUuugCGG- -5'
13007 5' -56.5 NC_003387.1 + 26565 0.67 0.598972
Target:  5'- uCGGGGGuugacuccucggGGUCaGGCCGcGCGAGCGgCg -3'
miRNA:   3'- cGUCCCC------------UCAGcUCGGU-CGUUUGCgG- -5'
13007 5' -56.5 NC_003387.1 + 21941 0.67 0.598972
Target:  5'- gGCGGcGGGGG-CG-G-CGGCAGGCGUCu -3'
miRNA:   3'- -CGUC-CCCUCaGCuCgGUCGUUUGCGG- -5'
13007 5' -56.5 NC_003387.1 + 46626 0.67 0.588089
Target:  5'- cGCAGGuGu-UCGAGCCuGCcgacGACGCCc -3'
miRNA:   3'- -CGUCCcCucAGCUCGGuCGu---UUGCGG- -5'
13007 5' -56.5 NC_003387.1 + 1390 0.67 0.588089
Target:  5'- aGCGGGucGGGGUCGcGCUcgaAGUugugcgAGGCGCCg -3'
miRNA:   3'- -CGUCC--CCUCAGCuCGG---UCG------UUUGCGG- -5'
13007 5' -56.5 NC_003387.1 + 49074 0.67 0.577242
Target:  5'- aGCcGGGGca-CGAGCCGGUcGACGgCg -3'
miRNA:   3'- -CGuCCCCucaGCUCGGUCGuUUGCgG- -5'
13007 5' -56.5 NC_003387.1 + 7405 0.67 0.577242
Target:  5'- cGCGGccGGGUCuuGCUGGCAAACGUCc -3'
miRNA:   3'- -CGUCccCUCAGcuCGGUCGUUUGCGG- -5'
13007 5' -56.5 NC_003387.1 + 28090 0.67 0.566441
Target:  5'- aGCAGGGcGAggugcGUCGGGUCGccCAGGCGCg -3'
miRNA:   3'- -CGUCCC-CU-----CAGCUCGGUc-GUUUGCGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.