miRNA display CGI


Results 1 - 20 of 30 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13025 5' -55 NC_003390.1 + 31507 0.65 0.699258
Target:  5'- cGGCCucgaggagcAGGACGaaGagcAGCUCAuGGCCu -3'
miRNA:   3'- aCCGG---------UUCUGUggCa--UCGAGUuCCGG- -5'
13025 5' -55 NC_003390.1 + 43687 0.66 0.688209
Target:  5'- aGGCCucc-CACCGgGGCcugUggGGCCu -3'
miRNA:   3'- aCCGGuucuGUGGCaUCGa--GuuCCGG- -5'
13025 5' -55 NC_003390.1 + 7735 0.66 0.673765
Target:  5'- gUGGCCcuguagaagagaagAAGGgACCcggAGCUCucGGGCCc -3'
miRNA:   3'- -ACCGG--------------UUCUgUGGca-UCGAGu-UCCGG- -5'
13025 5' -55 NC_003390.1 + 1403 0.66 0.665957
Target:  5'- gGGCCGuuuccaucaagGGAUGCuuCGUAGCauuGGGCCa -3'
miRNA:   3'- aCCGGU-----------UCUGUG--GCAUCGaguUCCGG- -5'
13025 5' -55 NC_003390.1 + 39765 0.66 0.66484
Target:  5'- aGGuCCAAGAagaauucCACUGUaucucccaagAGCUaCAGGGCUa -3'
miRNA:   3'- aCC-GGUUCU-------GUGGCA----------UCGA-GUUCCGG- -5'
13025 5' -55 NC_003390.1 + 34088 0.66 0.654776
Target:  5'- aGGCCucugagcGGGCGCUagcaggGGCUCuaagGGGCCu -3'
miRNA:   3'- aCCGGu------UCUGUGGca----UCGAGu---UCCGG- -5'
13025 5' -55 NC_003390.1 + 41413 0.66 0.643573
Target:  5'- aGGCCAgcAGAUauAUCG-AGCUCGauGGuGCCa -3'
miRNA:   3'- aCCGGU--UCUG--UGGCaUCGAGU--UC-CGG- -5'
13025 5' -55 NC_003390.1 + 1481 0.67 0.63236
Target:  5'- gUGGUCGAGcAgACCuucgAGCUCAucaaaggucAGGCCc -3'
miRNA:   3'- -ACCGGUUC-UgUGGca--UCGAGU---------UCCGG- -5'
13025 5' -55 NC_003390.1 + 15637 0.67 0.63236
Target:  5'- cGGCUcuaacAGACAgCUGUuGCUCAucgugcacaaAGGCCa -3'
miRNA:   3'- aCCGGu----UCUGU-GGCAuCGAGU----------UCCGG- -5'
13025 5' -55 NC_003390.1 + 2724 0.67 0.63236
Target:  5'- gGGCCGGGGCggcuaccucACCGaGGagaUCAGGGgCa -3'
miRNA:   3'- aCCGGUUCUG---------UGGCaUCg--AGUUCCgG- -5'
13025 5' -55 NC_003390.1 + 29880 0.67 0.631238
Target:  5'- aUGGCUAAG-CACUuugauGCUCAgcauguggagcauGGGCCa -3'
miRNA:   3'- -ACCGGUUCuGUGGcau--CGAGU-------------UCCGG- -5'
13025 5' -55 NC_003390.1 + 19911 0.67 0.631238
Target:  5'- aUGGCUAAG-CACUuugauGCUCAgcauguggagcauGGGCCa -3'
miRNA:   3'- -ACCGGUUCuGUGGcau--CGAGU-------------UCCGG- -5'
13025 5' -55 NC_003390.1 + 32350 0.67 0.621146
Target:  5'- gGGCacGGugACCGauggAGCUCuGGGCg -3'
miRNA:   3'- aCCGguUCugUGGCa---UCGAGuUCCGg -5'
13025 5' -55 NC_003390.1 + 10797 0.67 0.621146
Target:  5'- -aGCCAAG-CGCCGUcggGGC-CAGGGgCu -3'
miRNA:   3'- acCGGUUCuGUGGCA---UCGaGUUCCgG- -5'
13025 5' -55 NC_003390.1 + 29476 0.67 0.614421
Target:  5'- gGGCCAcaGGGgGCCGUgggggauccggagcgGGCgCGGGaGCCg -3'
miRNA:   3'- aCCGGU--UCUgUGGCA---------------UCGaGUUC-CGG- -5'
13025 5' -55 NC_003390.1 + 31855 0.67 0.609942
Target:  5'- gGGUgGAGuugGCCGuUGGUgUCGAGGCCa -3'
miRNA:   3'- aCCGgUUCug-UGGC-AUCG-AGUUCCGG- -5'
13025 5' -55 NC_003390.1 + 18712 0.67 0.609942
Target:  5'- uUGGCCAuccgcAGAgCAUCcc-GCUCGGGGUCg -3'
miRNA:   3'- -ACCGGU-----UCU-GUGGcauCGAGUUCCGG- -5'
13025 5' -55 NC_003390.1 + 6938 0.67 0.598758
Target:  5'- cGGCUAacaGGGC-CCGU-GCaggCAAGGCUa -3'
miRNA:   3'- aCCGGU---UCUGuGGCAuCGa--GUUCCGG- -5'
13025 5' -55 NC_003390.1 + 1873 0.68 0.576488
Target:  5'- cGGCUAuccAGaACACCaGUGGagggUCGAGGCUg -3'
miRNA:   3'- aCCGGU---UC-UGUGG-CAUCg---AGUUCCGG- -5'
13025 5' -55 NC_003390.1 + 7501 0.68 0.576488
Target:  5'- uUGGCCccaGAGAuCACCGgAGUcgucUCAGGaGCCc -3'
miRNA:   3'- -ACCGG---UUCU-GUGGCaUCG----AGUUC-CGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.