miRNA display CGI


Results 21 - 40 of 46 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13091 3' -60.2 NC_003401.1 + 70646 0.68 0.567715
Target:  5'- uGGcCGAGCAaGGCaccucacaggGGGCAcauGCCGUAUCUg -3'
miRNA:   3'- gUC-GCUCGU-CCG----------UCCGU---CGGCAUGGG- -5'
13091 3' -60.2 NC_003401.1 + 133137 0.68 0.557769
Target:  5'- cCAGCGAGCAagcaaGCAGGCcAGCgagcaGCCCu -3'
miRNA:   3'- -GUCGCUCGUc----CGUCCG-UCGgca--UGGG- -5'
13091 3' -60.2 NC_003401.1 + 402 0.68 0.557769
Target:  5'- cCAGCGAGCAagcaaGCAGGCcAGCgagcaGCCCu -3'
miRNA:   3'- -GUCGCUCGUc----CGUCCG-UCGgca--UGGG- -5'
13091 3' -60.2 NC_003401.1 + 125808 0.68 0.538032
Target:  5'- uCGGCGAGguGGCccAGGUuguguuGGuuGcACCCg -3'
miRNA:   3'- -GUCGCUCguCCG--UCCG------UCggCaUGGG- -5'
13091 3' -60.2 NC_003401.1 + 26916 0.68 0.535091
Target:  5'- -uGUGGGCucGGGCAGGCGGaguacuugcaccucCCGUguuuaGCCCu -3'
miRNA:   3'- guCGCUCG--UCCGUCCGUC--------------GGCA-----UGGG- -5'
13091 3' -60.2 NC_003401.1 + 132419 0.69 0.508899
Target:  5'- -cGCGGGggacccucgcccCGGGCGcaagauGGCGGCCGcgGCCCg -3'
miRNA:   3'- guCGCUC------------GUCCGU------CCGUCGGCa-UGGG- -5'
13091 3' -60.2 NC_003401.1 + 132602 0.69 0.499335
Target:  5'- cCGGCgGAGC-GGCacccggGGGCGGCCccgGCCCc -3'
miRNA:   3'- -GUCG-CUCGuCCG------UCCGUCGGca-UGGG- -5'
13091 3' -60.2 NC_003401.1 + 833 0.69 0.471141
Target:  5'- aAGCcAGCAGGCAGcccuacuaGCAGCCcagcaGCCCu -3'
miRNA:   3'- gUCGcUCGUCCGUC--------CGUCGGca---UGGG- -5'
13091 3' -60.2 NC_003401.1 + 133548 0.69 0.471141
Target:  5'- aAGCcAGCAGGCAGcccuacuaGCAGCCcagcaGCCCu -3'
miRNA:   3'- gUCGcUCGUCCGUC--------CGUCGGca---UGGG- -5'
13091 3' -60.2 NC_003401.1 + 119810 0.7 0.456439
Target:  5'- gCAGCGgcaccgaggcuaaacAGCGcGCAGGCGGCCGccACCa -3'
miRNA:   3'- -GUCGC---------------UCGUcCGUCCGUCGGCa-UGGg -5'
13091 3' -60.2 NC_003401.1 + 105485 0.7 0.443779
Target:  5'- -cGCaaGGcCAGGguGGCGGCCGUcACCUg -3'
miRNA:   3'- guCGc-UC-GUCCguCCGUCGGCA-UGGG- -5'
13091 3' -60.2 NC_003401.1 + 18171 0.7 0.434858
Target:  5'- gGGUGGGCAGGaCGGGU--CCGgacugGCCCa -3'
miRNA:   3'- gUCGCUCGUCC-GUCCGucGGCa----UGGG- -5'
13091 3' -60.2 NC_003401.1 + 16885 0.7 0.426042
Target:  5'- uGGCGAGCAGGUgcgAGG-AGCUGc-CCCa -3'
miRNA:   3'- gUCGCUCGUCCG---UCCgUCGGCauGGG- -5'
13091 3' -60.2 NC_003401.1 + 132558 0.7 0.426042
Target:  5'- gCGGCGcGC-GGCucccgaugccGGGCGGCCGccGCCCg -3'
miRNA:   3'- -GUCGCuCGuCCG----------UCCGUCGGCa-UGGG- -5'
13091 3' -60.2 NC_003401.1 + 54848 0.71 0.367441
Target:  5'- uGGUGaAGCAGGCgaccgaauucuGGGCGGCUaGUGCUCg -3'
miRNA:   3'- gUCGC-UCGUCCG-----------UCCGUCGG-CAUGGG- -5'
13091 3' -60.2 NC_003401.1 + 84046 0.72 0.351746
Target:  5'- -cGUGGGCaaggGGGCGGGCAGCgGcauuCCCg -3'
miRNA:   3'- guCGCUCG----UCCGUCCGUCGgCau--GGG- -5'
13091 3' -60.2 NC_003401.1 + 133061 0.72 0.329108
Target:  5'- cCAGCGAGCAaGCAGGCcuaCUGUcCCCu -3'
miRNA:   3'- -GUCGCUCGUcCGUCCGuc-GGCAuGGG- -5'
13091 3' -60.2 NC_003401.1 + 132997 0.72 0.329108
Target:  5'- cCAGCGAGCAaGCAGGCcuaCUGUcCCCu -3'
miRNA:   3'- -GUCGCUCGUcCGUCCGuc-GGCAuGGG- -5'
13091 3' -60.2 NC_003401.1 + 326 0.72 0.329108
Target:  5'- cCAGCGAGCAaGCAGGCcuaCUGUcCCCu -3'
miRNA:   3'- -GUCGCUCGUcCGUCCGuc-GGCAuGGG- -5'
13091 3' -60.2 NC_003401.1 + 262 0.72 0.329108
Target:  5'- cCAGCGAGCAaGCAGGCcuaCUGUcCCCu -3'
miRNA:   3'- -GUCGCUCGUcCGUCCGuc-GGCAuGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.