miRNA display CGI


Results 1 - 20 of 77 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13093 5' -55.4 NC_003401.1 + 7603 0.66 0.898992
Target:  5'- gGCCGaCGAGCA-CCCaaaguacacgUACUGGCA-GCu -3'
miRNA:   3'- -CGGUcGCUCGUcGGG----------AUGAUCGUuCG- -5'
13093 5' -55.4 NC_003401.1 + 89034 0.66 0.892269
Target:  5'- aGCCAguuuauGCGAGCGGaCCCUcagagaUGGCGgaaggacgGGCa -3'
miRNA:   3'- -CGGU------CGCUCGUC-GGGAug----AUCGU--------UCG- -5'
13093 5' -55.4 NC_003401.1 + 115260 0.66 0.885307
Target:  5'- cCCGGUggGAGCGGCUCgGCUccgGGguGGCu -3'
miRNA:   3'- cGGUCG--CUCGUCGGGaUGA---UCguUCG- -5'
13093 5' -55.4 NC_003401.1 + 96393 0.66 0.878109
Target:  5'- aGUgGGCGGGCaaaGGCUCgucgcgcagGCUGGaCGGGCa -3'
miRNA:   3'- -CGgUCGCUCG---UCGGGa--------UGAUC-GUUCG- -5'
13093 5' -55.4 NC_003401.1 + 63944 0.66 0.870681
Target:  5'- cGCCA-CGGGCcucGCCCgcCUGGuCAGGUg -3'
miRNA:   3'- -CGGUcGCUCGu--CGGGauGAUC-GUUCG- -5'
13093 5' -55.4 NC_003401.1 + 127333 0.66 0.863028
Target:  5'- uUCGaCGAGCAGCCCguuuccuccaACUGGCuGGUg -3'
miRNA:   3'- cGGUcGCUCGUCGGGa---------UGAUCGuUCG- -5'
13093 5' -55.4 NC_003401.1 + 133291 0.66 0.863028
Target:  5'- uGCUAGUaGGGCuGCUgggCUGCUAGUAGGg -3'
miRNA:   3'- -CGGUCG-CUCGuCGG---GAUGAUCGUUCg -5'
13093 5' -55.4 NC_003401.1 + 133251 0.66 0.863028
Target:  5'- uGCUAGUaGGGCuGCUgggCUGCUAGUAGGg -3'
miRNA:   3'- -CGGUCG-CUCGuCGG---GAUGAUCGUUCg -5'
13093 5' -55.4 NC_003401.1 + 133211 0.66 0.863028
Target:  5'- uGCUAGUaGGGCuGCUgggCUGCUAGUAGGg -3'
miRNA:   3'- -CGGUCG-CUCGuCGG---GAUGAUCGUUCg -5'
13093 5' -55.4 NC_003401.1 + 656 0.66 0.863028
Target:  5'- uGCUAGUaGGGCuGCUgggCUGCUAGUAGGg -3'
miRNA:   3'- -CGGUCG-CUCGuCGG---GAUGAUCGUUCg -5'
13093 5' -55.4 NC_003401.1 + 616 0.66 0.863028
Target:  5'- uGCUAGUaGGGCuGCUgggCUGCUAGUAGGg -3'
miRNA:   3'- -CGGUCG-CUCGuCGG---GAUGAUCGUUCg -5'
13093 5' -55.4 NC_003401.1 + 576 0.66 0.863028
Target:  5'- uGCUAGUaGGGCuGCUgggCUGCUAGUAGGg -3'
miRNA:   3'- -CGGUCG-CUCGuCGG---GAUGAUCGUUCg -5'
13093 5' -55.4 NC_003401.1 + 536 0.66 0.863028
Target:  5'- uGCUAGUaGGGCuGCUgggCUGCUAGUAGGg -3'
miRNA:   3'- -CGGUCG-CUCGuCGG---GAUGAUCGUUCg -5'
13093 5' -55.4 NC_003401.1 + 496 0.66 0.863028
Target:  5'- uGCUAGUaGGGCuGCUgggCUGCUAGUAGGg -3'
miRNA:   3'- -CGGUCG-CUCGuCGG---GAUGAUCGUUCg -5'
13093 5' -55.4 NC_003401.1 + 133331 0.66 0.863028
Target:  5'- uGCUAGUaGGGCuGCUgggCUGCUAGUAGGg -3'
miRNA:   3'- -CGGUCG-CUCGuCGG---GAUGAUCGUUCg -5'
13093 5' -55.4 NC_003401.1 + 133371 0.66 0.863028
Target:  5'- uGCUAGUaGGGCuGCUgggCUGCUAGUAGGg -3'
miRNA:   3'- -CGGUCG-CUCGuCGG---GAUGAUCGUUCg -5'
13093 5' -55.4 NC_003401.1 + 91714 0.67 0.852753
Target:  5'- -gCGGaCGAGCGGCUCUcgaccggaaaaaaaACacGGCAAGCg -3'
miRNA:   3'- cgGUC-GCUCGUCGGGA--------------UGa-UCGUUCG- -5'
13093 5' -55.4 NC_003401.1 + 123220 0.67 0.830299
Target:  5'- aCCGGCGuGCcGCCCgaGCUGuGCA-GCg -3'
miRNA:   3'- cGGUCGCuCGuCGGGa-UGAU-CGUuCG- -5'
13093 5' -55.4 NC_003401.1 + 105842 0.67 0.830299
Target:  5'- aGCCcGUGGGCuGUCCgUACUcguacGGCGGGUg -3'
miRNA:   3'- -CGGuCGCUCGuCGGG-AUGA-----UCGUUCG- -5'
13093 5' -55.4 NC_003401.1 + 918 0.67 0.830299
Target:  5'- aGCUGGCcGGCAGCCCUACUc------ -3'
miRNA:   3'- -CGGUCGcUCGUCGGGAUGAucguucg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.