miRNA display CGI


Results 21 - 40 of 77 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13093 5' -55.4 NC_003401.1 + 133063 0.85 0.105642
Target:  5'- gGCCAGCGAGCaAGCaggCCUACUguccccucAGCAAGCa -3'
miRNA:   3'- -CGGUCGCUCG-UCG---GGAUGA--------UCGUUCG- -5'
13093 5' -55.4 NC_003401.1 + 132999 0.85 0.105642
Target:  5'- gGCCAGCGAGCaAGCaggCCUACUguccccucAGCAAGCa -3'
miRNA:   3'- -CGGUCGCUCG-UCG---GGAUGA--------UCGUUCG- -5'
13093 5' -55.4 NC_003401.1 + 132959 0.7 0.663556
Target:  5'- gGCCAGCGAGCAGgcaggcagccguaCCCgguguCUcaCAAGCa -3'
miRNA:   3'- -CGGUCGCUCGUC-------------GGGau---GAucGUUCG- -5'
13093 5' -55.4 NC_003401.1 + 132454 0.73 0.519491
Target:  5'- gGCCGGCG-GC-GCCCgGCgcGCGGGCc -3'
miRNA:   3'- -CGGUCGCuCGuCGGGaUGauCGUUCG- -5'
13093 5' -55.4 NC_003401.1 + 127886 0.67 0.821624
Target:  5'- uGCCGGUGcGC-GCCagCUGCUGGCAguggAGUg -3'
miRNA:   3'- -CGGUCGCuCGuCGG--GAUGAUCGU----UCG- -5'
13093 5' -55.4 NC_003401.1 + 127333 0.66 0.863028
Target:  5'- uUCGaCGAGCAGCCCguuuccuccaACUGGCuGGUg -3'
miRNA:   3'- cGGUcGCUCGUCGGGa---------UGAUCGuUCG- -5'
13093 5' -55.4 NC_003401.1 + 124330 0.72 0.543795
Target:  5'- uGCCAacGCGAGCcucuauaggacGGCCCUGCgucacccagagaccAGCGAGUg -3'
miRNA:   3'- -CGGU--CGCUCG-----------UCGGGAUGa-------------UCGUUCG- -5'
13093 5' -55.4 NC_003401.1 + 123220 0.67 0.830299
Target:  5'- aCCGGCGuGCcGCCCgaGCUGuGCA-GCg -3'
miRNA:   3'- cGGUCGCuCGuCGGGa-UGAU-CGUuCG- -5'
13093 5' -55.4 NC_003401.1 + 122576 0.74 0.479996
Target:  5'- cGCCGGUGAGCcgcGGCCCUaagccuuauaguGCUGuGCA-GCg -3'
miRNA:   3'- -CGGUCGCUCG---UCGGGA------------UGAU-CGUuCG- -5'
13093 5' -55.4 NC_003401.1 + 120665 0.67 0.821624
Target:  5'- aCCAGUGAcgcguuuccuGCAGUCUggguuuucacCUGGCAAGCg -3'
miRNA:   3'- cGGUCGCU----------CGUCGGGau--------GAUCGUUCG- -5'
13093 5' -55.4 NC_003401.1 + 119803 0.69 0.716291
Target:  5'- aGgCGGCGcAGCGGCaCCgagGCUAaacagcgcGCAGGCg -3'
miRNA:   3'- -CgGUCGC-UCGUCG-GGa--UGAU--------CGUUCG- -5'
13093 5' -55.4 NC_003401.1 + 115260 0.66 0.885307
Target:  5'- cCCGGUggGAGCGGCUCgGCUccgGGguGGCu -3'
miRNA:   3'- cGGUCG--CUCGUCGGGaUGA---UCguUCG- -5'
13093 5' -55.4 NC_003401.1 + 106114 0.69 0.736507
Target:  5'- uCCAGUG-GCGGgCCUGCaaauuucgagAGCAGGCc -3'
miRNA:   3'- cGGUCGCuCGUCgGGAUGa---------UCGUUCG- -5'
13093 5' -55.4 NC_003401.1 + 105842 0.67 0.830299
Target:  5'- aGCCcGUGGGCuGUCCgUACUcguacGGCGGGUg -3'
miRNA:   3'- -CGGuCGCUCGuCGGG-AUGA-----UCGUUCG- -5'
13093 5' -55.4 NC_003401.1 + 98993 0.68 0.812768
Target:  5'- gGCCAGCGAGC-GUCUgauagggGCUAGgucucuGGCg -3'
miRNA:   3'- -CGGUCGCUCGuCGGGa------UGAUCgu----UCG- -5'
13093 5' -55.4 NC_003401.1 + 96393 0.66 0.878109
Target:  5'- aGUgGGCGGGCaaaGGCUCgucgcgcagGCUGGaCGGGCa -3'
miRNA:   3'- -CGgUCGCUCG---UCGGGa--------UGAUC-GUUCG- -5'
13093 5' -55.4 NC_003401.1 + 91800 0.67 0.825116
Target:  5'- uGUCAGCG-GCAgGCCCUaacuuccagaaucucAUUGGCGugccAGCg -3'
miRNA:   3'- -CGGUCGCuCGU-CGGGA---------------UGAUCGU----UCG- -5'
13093 5' -55.4 NC_003401.1 + 91714 0.67 0.852753
Target:  5'- -gCGGaCGAGCGGCUCUcgaccggaaaaaaaACacGGCAAGCg -3'
miRNA:   3'- cgGUC-GCUCGUCGGGA--------------UGa-UCGUUCG- -5'
13093 5' -55.4 NC_003401.1 + 89034 0.66 0.892269
Target:  5'- aGCCAguuuauGCGAGCGGaCCCUcagagaUGGCGgaaggacgGGCa -3'
miRNA:   3'- -CGGU------CGCUCGUC-GGGAug----AUCGU--------UCG- -5'
13093 5' -55.4 NC_003401.1 + 86005 0.68 0.76609
Target:  5'- aGCCAGgGGGCG--CCUGCUGG-GAGCc -3'
miRNA:   3'- -CGGUCgCUCGUcgGGAUGAUCgUUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.