miRNA display CGI


Results 1 - 20 of 31 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13103 5' -51.1 NC_003401.1 + 6061 0.65 0.992765
Target:  5'- -uGUGCCGCCUGGAUGgauuauguACCCc -3'
miRNA:   3'- cuCAUGGUGGGCUUGCaccauu--UGGG- -5'
13103 5' -51.1 NC_003401.1 + 126291 0.66 0.992129
Target:  5'- -uGUGUCGCCUGAACGUccGGUAggguggGACUCg -3'
miRNA:   3'- cuCAUGGUGGGCUUGCA--CCAU------UUGGG- -5'
13103 5' -51.1 NC_003401.1 + 41367 0.66 0.992129
Target:  5'- ---gGCCACgaGGugGUGGggcgcAGGCCCg -3'
miRNA:   3'- cucaUGGUGggCUugCACCa----UUUGGG- -5'
13103 5' -51.1 NC_003401.1 + 113338 0.66 0.99097
Target:  5'- -uGUACUuuggcauaaaagGCCCGGGCGauuuaggugccUGGU-GACCCg -3'
miRNA:   3'- cuCAUGG------------UGGGCUUGC-----------ACCAuUUGGG- -5'
13103 5' -51.1 NC_003401.1 + 107380 0.66 0.989681
Target:  5'- cGGU-CCACCUGGAguCGUccGGUucGGGCCCg -3'
miRNA:   3'- cUCAuGGUGGGCUU--GCA--CCA--UUUGGG- -5'
13103 5' -51.1 NC_003401.1 + 22576 0.66 0.988252
Target:  5'- ---cGCCACCCGGuuuaGUGGUcucuuacuCCCa -3'
miRNA:   3'- cucaUGGUGGGCUug--CACCAuuu-----GGG- -5'
13103 5' -51.1 NC_003401.1 + 112127 0.66 0.988252
Target:  5'- -cGUGCCuggaugCCGGucGCGUGGacugGGGCCCg -3'
miRNA:   3'- cuCAUGGug----GGCU--UGCACCa---UUUGGG- -5'
13103 5' -51.1 NC_003401.1 + 16339 0.66 0.988252
Target:  5'- gGAGgccgcugGCCACCCc-----GGUGAACCCg -3'
miRNA:   3'- -CUCa------UGGUGGGcuugcaCCAUUUGGG- -5'
13103 5' -51.1 NC_003401.1 + 89243 0.66 0.988252
Target:  5'- aGAGgaucGCacaGCCCGuuguGCGUGGUu--CCCc -3'
miRNA:   3'- -CUCa---UGg--UGGGCu---UGCACCAuuuGGG- -5'
13103 5' -51.1 NC_003401.1 + 22676 0.67 0.98494
Target:  5'- cGGgcCCGCCuCGAcggaaaccagGCGUGGUuAGCCa -3'
miRNA:   3'- cUCauGGUGG-GCU----------UGCACCAuUUGGg -5'
13103 5' -51.1 NC_003401.1 + 27954 0.67 0.98494
Target:  5'- -cGUACCAgCCGca-GUGGUAuuCCg -3'
miRNA:   3'- cuCAUGGUgGGCuugCACCAUuuGGg -5'
13103 5' -51.1 NC_003401.1 + 107631 0.67 0.978696
Target:  5'- cGGGUccGCCGCcaCCGGGCGcGGg--GCCCa -3'
miRNA:   3'- -CUCA--UGGUG--GGCUUGCaCCauuUGGG- -5'
13103 5' -51.1 NC_003401.1 + 30042 0.67 0.978696
Target:  5'- uGGGaUACCugCCGGucgccACGUcGGUAgugugaggcGACCCu -3'
miRNA:   3'- -CUC-AUGGugGGCU-----UGCA-CCAU---------UUGGG- -5'
13103 5' -51.1 NC_003401.1 + 84961 0.67 0.978696
Target:  5'- uGAGUGCaCAgCUGAAUGU-GUGGGCCa -3'
miRNA:   3'- -CUCAUG-GUgGGCUUGCAcCAUUUGGg -5'
13103 5' -51.1 NC_003401.1 + 50105 0.68 0.973583
Target:  5'- ---aACCACCUGGauaGCGUGGcgauGACCUc -3'
miRNA:   3'- cucaUGGUGGGCU---UGCACCau--UUGGG- -5'
13103 5' -51.1 NC_003401.1 + 17716 0.68 0.970717
Target:  5'- -uGUGCCGCCCGcuCGc-GUuuACCCa -3'
miRNA:   3'- cuCAUGGUGGGCuuGCacCAuuUGGG- -5'
13103 5' -51.1 NC_003401.1 + 125857 0.68 0.970717
Target:  5'- aGAGUuCCugCgCGGGCGUGaagcUGGGCCCc -3'
miRNA:   3'- -CUCAuGGugG-GCUUGCACc---AUUUGGG- -5'
13103 5' -51.1 NC_003401.1 + 107896 0.68 0.967634
Target:  5'- cGGGUccggcucgGCCGcCCCGAGCGUugccccGGUGGccuccACCCu -3'
miRNA:   3'- -CUCA--------UGGU-GGGCUUGCA------CCAUU-----UGGG- -5'
13103 5' -51.1 NC_003401.1 + 73910 0.68 0.964328
Target:  5'- uGGGU-CCAUuuGGucGCGUcgacGGUAAGCCCc -3'
miRNA:   3'- -CUCAuGGUGggCU--UGCA----CCAUUUGGG- -5'
13103 5' -51.1 NC_003401.1 + 21362 0.69 0.957022
Target:  5'- gGGGUggACCAgCUGcguuACGUGGUGGAUCUa -3'
miRNA:   3'- -CUCA--UGGUgGGCu---UGCACCAUUUGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.