miRNA display CGI


Results 1 - 20 of 45 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13105 3' -56.7 NC_003401.1 + 11783 0.66 0.887614
Target:  5'- aGGUGugGGCGucgacGGGC-CCGGc -3'
miRNA:   3'- cCCACugCUGCuuaucCCCGaGGCCa -5'
13105 3' -56.7 NC_003401.1 + 132510 0.67 0.850989
Target:  5'- cGGG-GGCGGCGGccgcGGGC-CCGGg -3'
miRNA:   3'- -CCCaCUGCUGCUuaucCCCGaGGCCa -5'
13105 3' -56.7 NC_003401.1 + 15370 0.67 0.850989
Target:  5'- -cGUGGCGGgGGAgGGGGGUUCaugaGGUc -3'
miRNA:   3'- ccCACUGCUgCUUaUCCCCGAGg---CCA- -5'
13105 3' -56.7 NC_003401.1 + 14348 0.67 0.81814
Target:  5'- uGGUGGCGGCuGAAc---GGCUCCGGc -3'
miRNA:   3'- cCCACUGCUG-CUUauccCCGAGGCCa -5'
13105 3' -56.7 NC_003401.1 + 115763 0.67 0.81814
Target:  5'- nGGGUG-CucCGggUGGGGGCggcUCGGc -3'
miRNA:   3'- -CCCACuGcuGCuuAUCCCCGa--GGCCa -5'
13105 3' -56.7 NC_003401.1 + 66176 0.67 0.81814
Target:  5'- -uGUGGCGAUGAcgAGGGuaUCCuGGa -3'
miRNA:   3'- ccCACUGCUGCUuaUCCCcgAGG-CCa -5'
13105 3' -56.7 NC_003401.1 + 112114 0.68 0.782628
Target:  5'- cGGUcGCGugGAcu-GGGGCccgUCCGGUc -3'
miRNA:   3'- cCCAcUGCugCUuauCCCCG---AGGCCA- -5'
13105 3' -56.7 NC_003401.1 + 107519 0.68 0.773396
Target:  5'- --uUGACGugGGAUAGGGGUaUCCa-- -3'
miRNA:   3'- cccACUGCugCUUAUCCCCG-AGGcca -5'
13105 3' -56.7 NC_003401.1 + 121156 0.68 0.754567
Target:  5'- cGGGcgcgGGgGGCGcg-GGGGGCgcgCCGGUu -3'
miRNA:   3'- -CCCa---CUgCUGCuuaUCCCCGa--GGCCA- -5'
13105 3' -56.7 NC_003401.1 + 121675 0.7 0.664589
Target:  5'- uGGUGGgGGCGAAUgcgaugcGGGGGaugCCGGg -3'
miRNA:   3'- cCCACUgCUGCUUA-------UCCCCga-GGCCa -5'
13105 3' -56.7 NC_003401.1 + 132770 0.7 0.655467
Target:  5'- gGGGcGGCGugGGggAGGGGaggCCGGc -3'
miRNA:   3'- -CCCaCUGCugCUuaUCCCCga-GGCCa -5'
13105 3' -56.7 NC_003401.1 + 71445 0.7 0.645314
Target:  5'- uGGGUGGCGugGAuugcacGGGGacggUCGGUg -3'
miRNA:   3'- -CCCACUGCugCUuau---CCCCga--GGCCA- -5'
13105 3' -56.7 NC_003401.1 + 28741 0.74 0.449221
Target:  5'- uGGGUGGaggGACGAG-AGGGagaGCUCCGGg -3'
miRNA:   3'- -CCCACUg--CUGCUUaUCCC---CGAGGCCa -5'
13105 3' -56.7 NC_003401.1 + 116274 0.76 0.33382
Target:  5'- nGGGUGGCucCGggUGGGGGCggccuaaaauccuuaCCGGUa -3'
miRNA:   3'- -CCCACUGcuGCuuAUCCCCGa--------------GGCCA- -5'
13105 3' -56.7 NC_003401.1 + 115699 0.79 0.2348
Target:  5'- nGGGUGGCucCGggUGGGGGCggcucggcUCCGGg -3'
miRNA:   3'- -CCCACUGcuGCuuAUCCCCG--------AGGCCa -5'
13105 3' -56.7 NC_003401.1 + 115731 0.79 0.2348
Target:  5'- nGGGUGGCucCGggUGGGGGCggcucggcUCCGGg -3'
miRNA:   3'- -CCCACUGcuGCuuAUCCCCG--------AGGCCa -5'
13105 3' -56.7 NC_003401.1 + 115635 0.79 0.2348
Target:  5'- nGGGUGGCucCGggUGGGGGCggcucggcUCCGGg -3'
miRNA:   3'- -CCCACUGcuGCuuAUCCCCG--------AGGCCa -5'
13105 3' -56.7 NC_003401.1 + 115347 0.79 0.2348
Target:  5'- nGGGUGGCucCGggUGGGGGCggcucggcUCCGGg -3'
miRNA:   3'- -CCCACUGcuGCuuAUCCCCG--------AGGCCa -5'
13105 3' -56.7 NC_003401.1 + 115475 0.79 0.2348
Target:  5'- nGGGUGGCucCGggUGGGGGCggcucggcUCCGGg -3'
miRNA:   3'- -CCCACUGcuGCuuAUCCCCG--------AGGCCa -5'
13105 3' -56.7 NC_003401.1 + 115443 0.79 0.2348
Target:  5'- nGGGUGGCucCGggUGGGGGCggcucggcUCCGGg -3'
miRNA:   3'- -CCCACUGcuGCuuAUCCCCG--------AGGCCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.