Results 21 - 30 of 30 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
13106 | 5' | -56.3 | NC_003401.1 | + | 9093 | 0.69 | 0.718453 |
Target: 5'- uCGGUaaucuuGGAGCUUAuaCGaCACCugGGGa -3' miRNA: 3'- -GCCG------CCUCGAAUuaGC-GUGGugCCCc -5' |
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13106 | 5' | -56.3 | NC_003401.1 | + | 14918 | 0.68 | 0.820784 |
Target: 5'- aCGGCccuGGAGUUUGAcUGCAgCugGGaGGa -3' miRNA: 3'- -GCCG---CCUCGAAUUaGCGUgGugCC-CC- -5' |
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13106 | 5' | -56.3 | NC_003401.1 | + | 27699 | 0.68 | 0.820784 |
Target: 5'- cCGGCGuGGUggc-UCGCcgGCUGCGGGGg -3' miRNA: 3'- -GCCGCcUCGaauuAGCG--UGGUGCCCC- -5' |
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13106 | 5' | -56.3 | NC_003401.1 | + | 132688 | 0.67 | 0.841577 |
Target: 5'- uCGGCGGGGCccggcgcggggCGCgACCgagggccccgggagaACGGGGa -3' miRNA: 3'- -GCCGCCUCGaauua------GCG-UGG---------------UGCCCC- -5' |
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13106 | 5' | -56.3 | NC_003401.1 | + | 132413 | 0.66 | 0.875965 |
Target: 5'- -cGCGGGGCcgGGg-GUcCCGCGGGGg -3' miRNA: 3'- gcCGCCUCGaaUUagCGuGGUGCCCC- -5' |
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13106 | 5' | -56.3 | NC_003401.1 | + | 18434 | 0.66 | 0.88303 |
Target: 5'- uCGGCGGAGUgucacgUGucccuaCGCGacaACGGGGu -3' miRNA: 3'- -GCCGCCUCGa-----AUua----GCGUgg-UGCCCC- -5' |
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13106 | 5' | -56.3 | NC_003401.1 | + | 51732 | 0.66 | 0.88303 |
Target: 5'- gGGCGGAGUc--AUCGCAUUagGCGGa- -3' miRNA: 3'- gCCGCCUCGaauUAGCGUGG--UGCCcc -5' |
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13106 | 5' | -56.3 | NC_003401.1 | + | 93544 | 0.66 | 0.902884 |
Target: 5'- uCGGUGGGaCUcaaUAGUCGCACCucauCGGa- -3' miRNA: 3'- -GCCGCCUcGA---AUUAGCGUGGu---GCCcc -5' |
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13106 | 5' | -56.3 | NC_003401.1 | + | 122349 | 0.66 | 0.902884 |
Target: 5'- gGGUGGcAGUgugUAAgucacgCGCGCCGCGGc- -3' miRNA: 3'- gCCGCC-UCGa--AUUa-----GCGUGGUGCCcc -5' |
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13106 | 5' | -56.3 | NC_003401.1 | + | 85712 | 0.73 | 0.526988 |
Target: 5'- aGGCGGAGCg----CGCACaCGCGcGGa -3' miRNA: 3'- gCCGCCUCGaauuaGCGUG-GUGC-CCc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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