miRNA display CGI


Results 1 - 20 of 40 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13110 5' -62.5 NC_003401.1 + 96039 0.66 0.580864
Target:  5'- gGCCAaC-UCACUaACCGGUCUCCUUUGg -3'
miRNA:   3'- -CGGUcGcGGUGG-UGGCCGGAGGAGAC- -5'
13110 5' -62.5 NC_003401.1 + 27972 0.66 0.548645
Target:  5'- -aCAGCGCCAUgacguccuuguguaUGCCGaCCUCCUCg- -3'
miRNA:   3'- cgGUCGCGGUG--------------GUGGCcGGAGGAGac -5'
13110 5' -62.5 NC_003401.1 + 118607 0.67 0.541879
Target:  5'- cCCcGCGaucgCACCuuugGCCGGCCggCCUCUGc -3'
miRNA:   3'- cGGuCGCg---GUGG----UGGCCGGa-GGAGAC- -5'
13110 5' -62.5 NC_003401.1 + 118850 0.67 0.541879
Target:  5'- cCCcGUGCgCAUCGCCGcCCUCCUCg- -3'
miRNA:   3'- cGGuCGCG-GUGGUGGCcGGAGGAGac -5'
13110 5' -62.5 NC_003401.1 + 12340 0.67 0.532262
Target:  5'- cGCCAGC-CCACCACCgaaacgcgGGUCUUCg--- -3'
miRNA:   3'- -CGGUCGcGGUGGUGG--------CCGGAGGagac -5'
13110 5' -62.5 NC_003401.1 + 41181 0.67 0.531303
Target:  5'- aGCCAcgGCCGCCGCUcugucaaacugcaGGCCUCUgCUGu -3'
miRNA:   3'- -CGGUcgCGGUGGUGG-------------CCGGAGGaGAC- -5'
13110 5' -62.5 NC_003401.1 + 17643 0.67 0.513218
Target:  5'- cGCCGcguccGCGUCGCCGCCGGaaUCCa--- -3'
miRNA:   3'- -CGGU-----CGCGGUGGUGGCCggAGGagac -5'
13110 5' -62.5 NC_003401.1 + 132657 0.67 0.513218
Target:  5'- gGCgCGGCGCCGCCGggcUCGGCCggaCCg--- -3'
miRNA:   3'- -CG-GUCGCGGUGGU---GGCCGGa--GGagac -5'
13110 5' -62.5 NC_003401.1 + 119951 0.67 0.513218
Target:  5'- uGCCGcuGCGCCGCCuCCGGCCa------ -3'
miRNA:   3'- -CGGU--CGCGGUGGuGGCCGGaggagac -5'
13110 5' -62.5 NC_003401.1 + 8753 0.67 0.513218
Target:  5'- aGCCGGuCGCCGCCACagGGCg-CCUg-- -3'
miRNA:   3'- -CGGUC-GCGGUGGUGg-CCGgaGGAgac -5'
13110 5' -62.5 NC_003401.1 + 132347 0.67 0.510385
Target:  5'- cGCCGGCccgggcccgcggccGCCGCCcCCGGCCgCCcCg- -3'
miRNA:   3'- -CGGUCG--------------CGGUGGuGGCCGGaGGaGac -5'
13110 5' -62.5 NC_003401.1 + 120368 0.67 0.503801
Target:  5'- uGCUAGCGUUuucCCACUGGCCguuaguaUUCUGg -3'
miRNA:   3'- -CGGUCGCGGu--GGUGGCCGGag-----GAGAC- -5'
13110 5' -62.5 NC_003401.1 + 128043 0.67 0.503801
Target:  5'- uGCCAGCaGCUggcGCgCACCGGCacgccugUCCUCg- -3'
miRNA:   3'- -CGGUCG-CGG---UG-GUGGCCGg------AGGAGac -5'
13110 5' -62.5 NC_003401.1 + 121947 0.67 0.500991
Target:  5'- gGCUGGCGCgGCCgugccacgcccccuGCCGcGCCUCCcggcCUGu -3'
miRNA:   3'- -CGGUCGCGgUGG--------------UGGC-CGGAGGa---GAC- -5'
13110 5' -62.5 NC_003401.1 + 27687 0.68 0.485198
Target:  5'- gGCCAGCG-CACaGCCGGCCcCCg--- -3'
miRNA:   3'- -CGGUCGCgGUGgUGGCCGGaGGagac -5'
13110 5' -62.5 NC_003401.1 + 9368 0.69 0.422892
Target:  5'- cGCCGGCGCC-CUACUGGCCg------ -3'
miRNA:   3'- -CGGUCGCGGuGGUGGCCGGaggagac -5'
13110 5' -62.5 NC_003401.1 + 119527 0.69 0.414387
Target:  5'- cGCCGGCcggucaaaaaGCCACaGCaCGGCCU-CUCUGu -3'
miRNA:   3'- -CGGUCG----------CGGUGgUG-GCCGGAgGAGAC- -5'
13110 5' -62.5 NC_003401.1 + 132825 0.69 0.414387
Target:  5'- cGCCgaGGCGCCccggGCC-CCGGCCccCCUCc- -3'
miRNA:   3'- -CGG--UCGCGG----UGGuGGCCGGa-GGAGac -5'
13110 5' -62.5 NC_003401.1 + 89844 0.69 0.414387
Target:  5'- aGCCAGgGaCGCC-CCuGCCUCCUCc- -3'
miRNA:   3'- -CGGUCgCgGUGGuGGcCGGAGGAGac -5'
13110 5' -62.5 NC_003401.1 + 48842 0.69 0.405987
Target:  5'- -aCAGCGCCGCCuuuACCcaaGCgCUCCUCUc -3'
miRNA:   3'- cgGUCGCGGUGG---UGGc--CG-GAGGAGAc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.