miRNA display CGI


Results 1 - 20 of 50 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13116 5' -58.5 NC_003401.1 + 118282 0.66 0.837447
Target:  5'- gCCCAUgGgGCgGCuuuuGCCGCCCGgggUCGCcgGCg -3'
miRNA:   3'- -GGGUAgCaUG-CG----UGGCGGGC---AGCG--CG- -5'
13116 5' -58.5 NC_003401.1 + 58825 0.66 0.837447
Target:  5'- cUCUcgUGUAgGUACCugGCCCGgucaaGCGCg -3'
miRNA:   3'- -GGGuaGCAUgCGUGG--CGGGCag---CGCG- -5'
13116 5' -58.5 NC_003401.1 + 109487 0.66 0.832622
Target:  5'- gCCCGuUCGccucaACGCACCGaggccgucggagugaCCCGUCaGgGCa -3'
miRNA:   3'- -GGGU-AGCa----UGCGUGGC---------------GGGCAG-CgCG- -5'
13116 5' -58.5 NC_003401.1 + 116712 0.66 0.821127
Target:  5'- uCCCG-CGaccAUGCugCGCCCcguauUCGUGCg -3'
miRNA:   3'- -GGGUaGCa--UGCGugGCGGGc----AGCGCG- -5'
13116 5' -58.5 NC_003401.1 + 16980 0.66 0.81272
Target:  5'- aCCCGgauuaCGUcagACaGCACCagauuCCCGUCGCGg -3'
miRNA:   3'- -GGGUa----GCA---UG-CGUGGc----GGGCAGCGCg -5'
13116 5' -58.5 NC_003401.1 + 32981 0.66 0.804159
Target:  5'- aCCGuuUCGUGCGacaGCCGCCgGcaUCGguCGCa -3'
miRNA:   3'- gGGU--AGCAUGCg--UGGCGGgC--AGC--GCG- -5'
13116 5' -58.5 NC_003401.1 + 16232 0.66 0.804159
Target:  5'- gCCAggGUGCGCcggAUCGCCCuUCGCu- -3'
miRNA:   3'- gGGUagCAUGCG---UGGCGGGcAGCGcg -5'
13116 5' -58.5 NC_003401.1 + 80620 0.67 0.795449
Target:  5'- cCCCAUCaucuuCACCGCUCGUuccCGCGUc -3'
miRNA:   3'- -GGGUAGcaugcGUGGCGGGCA---GCGCG- -5'
13116 5' -58.5 NC_003401.1 + 14855 0.67 0.792809
Target:  5'- aCCAcguucgggugguacUCGUGCGCGCgCGCCaCGcCcCGCc -3'
miRNA:   3'- gGGU--------------AGCAUGCGUG-GCGG-GCaGcGCG- -5'
13116 5' -58.5 NC_003401.1 + 17921 0.67 0.786601
Target:  5'- gUCCGUUcacACGCugUcCCCGUCGCGg -3'
miRNA:   3'- -GGGUAGca-UGCGugGcGGGCAGCGCg -5'
13116 5' -58.5 NC_003401.1 + 53025 0.67 0.786601
Target:  5'- gCUGUCGUGCGCcggggGCCCGcagGCGCa -3'
miRNA:   3'- gGGUAGCAUGCGugg--CGGGCag-CGCG- -5'
13116 5' -58.5 NC_003401.1 + 19131 0.67 0.786601
Target:  5'- gCCCuccUGgcUGCACgCGUCUGUCaGCGCg -3'
miRNA:   3'- -GGGua-GCauGCGUG-GCGGGCAG-CGCG- -5'
13116 5' -58.5 NC_003401.1 + 118848 0.67 0.777621
Target:  5'- uCCCc-CGUGCGCaucGCCGCCCuccUCGCc- -3'
miRNA:   3'- -GGGuaGCAUGCG---UGGCGGGc--AGCGcg -5'
13116 5' -58.5 NC_003401.1 + 17659 0.67 0.777621
Target:  5'- aCCCGggGgccacGCGCGCCGCguccgCGUCGcCGCc -3'
miRNA:   3'- -GGGUagCa----UGCGUGGCGg----GCAGC-GCG- -5'
13116 5' -58.5 NC_003401.1 + 72105 0.67 0.7593
Target:  5'- gCCGUcCGUucgACGCAgUGCCCGUauggaCGCuGCa -3'
miRNA:   3'- gGGUA-GCA---UGCGUgGCGGGCA-----GCG-CG- -5'
13116 5' -58.5 NC_003401.1 + 11765 0.67 0.7593
Target:  5'- gCCCggCGUugGCuuCGCgguggUgGUCGCGCc -3'
miRNA:   3'- -GGGuaGCAugCGugGCG-----GgCAGCGCG- -5'
13116 5' -58.5 NC_003401.1 + 132553 0.67 0.749976
Target:  5'- gCCCcgCGaacCGaaaGCgGCCCGgCGCGCg -3'
miRNA:   3'- -GGGuaGCau-GCg--UGgCGGGCaGCGCG- -5'
13116 5' -58.5 NC_003401.1 + 132358 0.67 0.749976
Target:  5'- gCCCG-CGgcCGCcgcccccgGCCGCCCcgcGcCGCGCg -3'
miRNA:   3'- -GGGUaGCauGCG--------UGGCGGG---CaGCGCG- -5'
13116 5' -58.5 NC_003401.1 + 132254 0.67 0.749976
Target:  5'- gCCAUCuUGCGC-CCGgggcgaggguccCCCG-CGCGCc -3'
miRNA:   3'- gGGUAGcAUGCGuGGC------------GGGCaGCGCG- -5'
13116 5' -58.5 NC_003401.1 + 132453 0.68 0.72145
Target:  5'- gCCggCGgcgcccgGCGCGCgGgCCCGgggggCGCGCg -3'
miRNA:   3'- gGGuaGCa------UGCGUGgC-GGGCa----GCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.