miRNA display CGI


Results 1 - 20 of 49 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13118 3' -59.5 NC_003401.1 + 120237 0.66 0.767407
Target:  5'- -cCGCCugGUgGGCCCUgGcaacAGACCGc -3'
miRNA:   3'- gcGCGGugUAgUCGGGGgCu---UCUGGC- -5'
13118 3' -59.5 NC_003401.1 + 23394 0.66 0.758099
Target:  5'- gCGCGCguggcaACAUCuuucgguGCCCuCCGAAcGACCc -3'
miRNA:   3'- -GCGCGg-----UGUAGu------CGGG-GGCUU-CUGGc -5'
13118 3' -59.5 NC_003401.1 + 126564 0.66 0.758099
Target:  5'- aCGCGUCACAcCuGa-CCUGAAGGCCa -3'
miRNA:   3'- -GCGCGGUGUaGuCggGGGCUUCUGGc -5'
13118 3' -59.5 NC_003401.1 + 86980 0.66 0.748685
Target:  5'- gGCGCC---UUAGCCCUCGGccGCCGu -3'
miRNA:   3'- gCGCGGuguAGUCGGGGGCUucUGGC- -5'
13118 3' -59.5 NC_003401.1 + 118539 0.66 0.748685
Target:  5'- -cCGCCgGCGUCAGCgUCgCCGcAGGCCGa -3'
miRNA:   3'- gcGCGG-UGUAGUCG-GG-GGCuUCUGGC- -5'
13118 3' -59.5 NC_003401.1 + 21309 0.66 0.748685
Target:  5'- uCGCcCuCGCggCGGUCCCCGAAGcCCu -3'
miRNA:   3'- -GCGcG-GUGuaGUCGGGGGCUUCuGGc -5'
13118 3' -59.5 NC_003401.1 + 53187 0.66 0.747738
Target:  5'- uGCGCCuGCG--GGCCCCCGgcGcacgacagcagacACCGg -3'
miRNA:   3'- gCGCGG-UGUagUCGGGGGCuuC-------------UGGC- -5'
13118 3' -59.5 NC_003401.1 + 23327 0.66 0.739171
Target:  5'- cCGCcCUGCAccCGGCuCCCCGAGGucACCGa -3'
miRNA:   3'- -GCGcGGUGUa-GUCG-GGGGCUUC--UGGC- -5'
13118 3' -59.5 NC_003401.1 + 20257 0.66 0.739171
Target:  5'- cCGCGgC-CAUUGGCUCCgCGguGACCGu -3'
miRNA:   3'- -GCGCgGuGUAGUCGGGG-GCuuCUGGC- -5'
13118 3' -59.5 NC_003401.1 + 119122 0.66 0.729568
Target:  5'- --gGCCACGUC-GCgCCUGGAGACgGc -3'
miRNA:   3'- gcgCGGUGUAGuCGgGGGCUUCUGgC- -5'
13118 3' -59.5 NC_003401.1 + 64691 0.66 0.729568
Target:  5'- gCGCGCCAucCGUCu-CCCCUGGcuACCGc -3'
miRNA:   3'- -GCGCGGU--GUAGucGGGGGCUucUGGC- -5'
13118 3' -59.5 NC_003401.1 + 102395 0.66 0.729568
Target:  5'- cCGCGCCACGaggggCAGUUCuuGA--ACCGg -3'
miRNA:   3'- -GCGCGGUGUa----GUCGGGggCUucUGGC- -5'
13118 3' -59.5 NC_003401.1 + 132699 0.66 0.729568
Target:  5'- gCGCGCCGCggcuuGUgGGgCCCCG-GGcCCGg -3'
miRNA:   3'- -GCGCGGUG-----UAgUCgGGGGCuUCuGGC- -5'
13118 3' -59.5 NC_003401.1 + 74107 0.66 0.729568
Target:  5'- gCGUgGCCACGUCGGUaaaCCUGAuuuuGGCCc -3'
miRNA:   3'- -GCG-CGGUGUAGUCGg--GGGCUu---CUGGc -5'
13118 3' -59.5 NC_003401.1 + 82603 0.66 0.719884
Target:  5'- gGCG-CAUAUguGCCCuuGAGGGCg- -3'
miRNA:   3'- gCGCgGUGUAguCGGGggCUUCUGgc -5'
13118 3' -59.5 NC_003401.1 + 55189 0.66 0.719884
Target:  5'- aGCGCCGCGggggCAGUCCCaucu-GCCGu -3'
miRNA:   3'- gCGCGGUGUa---GUCGGGGgcuucUGGC- -5'
13118 3' -59.5 NC_003401.1 + 43953 0.67 0.710128
Target:  5'- aCG-GUCGCAUCuuuGCgCCCaAAGACCGg -3'
miRNA:   3'- -GCgCGGUGUAGu--CGgGGGcUUCUGGC- -5'
13118 3' -59.5 NC_003401.1 + 74178 0.67 0.704243
Target:  5'- uGCGCCGCGggCGGUCUCCGGuucgguuuggcuuugAGugUGg -3'
miRNA:   3'- gCGCGGUGUa-GUCGGGGGCU---------------UCugGC- -5'
13118 3' -59.5 NC_003401.1 + 132652 0.67 0.699323
Target:  5'- gGCGCCGCcgggcUCGGCCggaccggggcgcuCCCGGGagucGGCCGg -3'
miRNA:   3'- gCGCGGUGu----AGUCGG-------------GGGCUU----CUGGC- -5'
13118 3' -59.5 NC_003401.1 + 71668 0.67 0.690434
Target:  5'- aGcCGCCugGgaCAGCa-CCGAGGGCCGa -3'
miRNA:   3'- gC-GCGGugUa-GUCGggGGCUUCUGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.