miRNA display CGI


Results 1 - 20 of 45 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13126 3' -53.1 NC_003401.1 + 69931 0.66 0.967906
Target:  5'- aGGUUaGuCCGccAUCUAGCGGCcACGGa -3'
miRNA:   3'- -CUAGcCuGGU--UAGAUCGCCGuUGCCg -5'
13126 3' -53.1 NC_003401.1 + 18147 0.66 0.964637
Target:  5'- -cUCGGGgCGAUCUGGCguuucuGGUcACGGg -3'
miRNA:   3'- cuAGCCUgGUUAGAUCG------CCGuUGCCg -5'
13126 3' -53.1 NC_003401.1 + 30771 0.66 0.964637
Target:  5'- ---aGaGGCCGuuucgagUUGGCGGCAACGGg -3'
miRNA:   3'- cuagC-CUGGUua-----GAUCGCCGUUGCCg -5'
13126 3' -53.1 NC_003401.1 + 121920 0.66 0.964637
Target:  5'- uGUUGGAgCGGggggcGCGGguGCGGCg -3'
miRNA:   3'- cUAGCCUgGUUagau-CGCCguUGCCG- -5'
13126 3' -53.1 NC_003401.1 + 28180 0.66 0.964637
Target:  5'- cGAUgGGA-CGGUC-AGCucaGGCGGCGGUa -3'
miRNA:   3'- -CUAgCCUgGUUAGaUCG---CCGUUGCCG- -5'
13126 3' -53.1 NC_003401.1 + 120832 0.66 0.961141
Target:  5'- --aCGGGCCuuUUugacggccuUGGCGGUuccGCGGCu -3'
miRNA:   3'- cuaGCCUGGuuAG---------AUCGCCGu--UGCCG- -5'
13126 3' -53.1 NC_003401.1 + 88947 0.66 0.961141
Target:  5'- -uUCGGGCaCAcgCcguagGGCuGGCAgggACGGCa -3'
miRNA:   3'- cuAGCCUG-GUuaGa----UCG-CCGU---UGCCG- -5'
13126 3' -53.1 NC_003401.1 + 28026 0.66 0.961141
Target:  5'- cGUCGGAaagcuccacgucCCGuuugcgcuUCUGGUGGCGagACGGUg -3'
miRNA:   3'- cUAGCCU------------GGUu-------AGAUCGCCGU--UGCCG- -5'
13126 3' -53.1 NC_003401.1 + 103346 0.66 0.957413
Target:  5'- cGGUUGGACCAAagCUGGUGcGCuucAUGGa -3'
miRNA:   3'- -CUAGCCUGGUUa-GAUCGC-CGu--UGCCg -5'
13126 3' -53.1 NC_003401.1 + 69774 0.66 0.953448
Target:  5'- ---gGGACCGuugcGGCGGUuuCGGCg -3'
miRNA:   3'- cuagCCUGGUuagaUCGCCGuuGCCG- -5'
13126 3' -53.1 NC_003401.1 + 18411 0.66 0.953448
Target:  5'- cGGUCGGuuucCCAGg--GGUGGUcuCGGCg -3'
miRNA:   3'- -CUAGCCu---GGUUagaUCGCCGuuGCCG- -5'
13126 3' -53.1 NC_003401.1 + 44997 0.66 0.952626
Target:  5'- uGGUCGGAUUuuaaau-CGGCAAUGGCg -3'
miRNA:   3'- -CUAGCCUGGuuagaucGCCGUUGCCG- -5'
13126 3' -53.1 NC_003401.1 + 13662 0.67 0.949241
Target:  5'- --gCGGGCCA----GGCGGUcGCGGUu -3'
miRNA:   3'- cuaGCCUGGUuagaUCGCCGuUGCCG- -5'
13126 3' -53.1 NC_003401.1 + 98874 0.67 0.946599
Target:  5'- gGAUCGGAUaCAGUUUuguuuuaaugaacucGGCGGCGAaucccgGGCu -3'
miRNA:   3'- -CUAGCCUG-GUUAGA---------------UCGCCGUUg-----CCG- -5'
13126 3' -53.1 NC_003401.1 + 58292 0.67 0.944788
Target:  5'- aGcgUGGACCAAUCUGcUGGUAcaaggaAUGGCc -3'
miRNA:   3'- -CuaGCCUGGUUAGAUcGCCGU------UGCCG- -5'
13126 3' -53.1 NC_003401.1 + 89607 0.67 0.94433
Target:  5'- gGAUgCGGuggugcaaccgucGCCAAcCUGGCGGCccUGGCa -3'
miRNA:   3'- -CUA-GCC-------------UGGUUaGAUCGCCGuuGCCG- -5'
13126 3' -53.1 NC_003401.1 + 127996 0.67 0.94433
Target:  5'- ---aGGGCCGAUCUgauuucgcccccgGGCaGCAGCguGGCa -3'
miRNA:   3'- cuagCCUGGUUAGA-------------UCGcCGUUG--CCG- -5'
13126 3' -53.1 NC_003401.1 + 12049 0.67 0.943404
Target:  5'- cGGUCGGaugaccucuugcuuGCCGGUCacGGCGGUcuCGGUc -3'
miRNA:   3'- -CUAGCC--------------UGGUUAGa-UCGCCGuuGCCG- -5'
13126 3' -53.1 NC_003401.1 + 103907 0.67 0.929934
Target:  5'- ---aGaGGCCAgcAUCUcGGCGGCcgAACGGCu -3'
miRNA:   3'- cuagC-CUGGU--UAGA-UCGCCG--UUGCCG- -5'
13126 3' -53.1 NC_003401.1 + 105464 0.67 0.929934
Target:  5'- --cUGGGCC--UCUAGCGuuaGguGCGGCa -3'
miRNA:   3'- cuaGCCUGGuuAGAUCGC---CguUGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.