miRNA display CGI


Results 1 - 20 of 54 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13127 3' -63.2 NC_003401.1 + 133559 0.66 0.567825
Target:  5'- -cGGA---CCGCCGgGCaCCcGGCCCa -3'
miRNA:   3'- guCCUguaGGCGGCgCGcGGaCCGGG- -5'
13127 3' -63.2 NC_003401.1 + 132858 0.76 0.144298
Target:  5'- cCGGGGCccucgGUCgCGCCcCGCGCCgGGCCCc -3'
miRNA:   3'- -GUCCUG-----UAG-GCGGcGCGCGGaCCGGG- -5'
13127 3' -63.2 NC_003401.1 + 132741 0.67 0.52002
Target:  5'- gAGGACcgCCauGCCGgGCGC--GGCCg -3'
miRNA:   3'- gUCCUGuaGG--CGGCgCGCGgaCCGGg -5'
13127 3' -63.2 NC_003401.1 + 132713 0.74 0.188667
Target:  5'- --cGGCAUCgggaGCCGCGCGCCgcggcuuguggGGCCCc -3'
miRNA:   3'- gucCUGUAGg---CGGCGCGCGGa----------CCGGG- -5'
13127 3' -63.2 NC_003401.1 + 132668 0.73 0.233496
Target:  5'- gGGGGCGUCggggCGCgGCGcCGCCgGGCUCg -3'
miRNA:   3'- gUCCUGUAG----GCGgCGC-GCGGaCCGGG- -5'
13127 3' -63.2 NC_003401.1 + 132641 0.71 0.309521
Target:  5'- aAGGugGUCU-CCGCGcCGCCgggaggggggccggGGCCCg -3'
miRNA:   3'- gUCCugUAGGcGGCGC-GCGGa-------------CCGGG- -5'
13127 3' -63.2 NC_003401.1 + 132541 0.66 0.558159
Target:  5'- cCGGGGCcccacaagCCGCgGCGCGC--GGCUCc -3'
miRNA:   3'- -GUCCUGua------GGCGgCGCGCGgaCCGGG- -5'
13127 3' -63.2 NC_003401.1 + 132509 0.75 0.167173
Target:  5'- gGGGGCggCgGCCGCGgGCCcgGGCCg -3'
miRNA:   3'- gUCCUGuaGgCGGCGCgCGGa-CCGGg -5'
13127 3' -63.2 NC_003401.1 + 132439 0.73 0.233496
Target:  5'- cCGGGGCcgCCcCCGgGUGCCgcuccgccgGGCCCg -3'
miRNA:   3'- -GUCCUGuaGGcGGCgCGCGGa--------CCGGG- -5'
13127 3' -63.2 NC_003401.1 + 132377 0.74 0.175494
Target:  5'- cCGGcGGCGgcgCCgGCCGgGCGCCUccgGGCCCg -3'
miRNA:   3'- -GUC-CUGUa--GG-CGGCgCGCGGA---CCGGG- -5'
13127 3' -63.2 NC_003401.1 + 132376 0.71 0.274291
Target:  5'- --cGGCcgCCccgcGCCGCGCGCCgGGCCg -3'
miRNA:   3'- gucCUGuaGG----CGGCGCGCGGaCCGGg -5'
13127 3' -63.2 NC_003401.1 + 132334 0.66 0.538975
Target:  5'- -cGGcCcUCCGCCcCGCcgGCCcgGGCCCg -3'
miRNA:   3'- guCCuGuAGGCGGcGCG--CGGa-CCGGG- -5'
13127 3' -63.2 NC_003401.1 + 132266 0.8 0.069285
Target:  5'- cCGGGGCgaggGUCCcCCGCGCGCCccccgGGCCCg -3'
miRNA:   3'- -GUCCUG----UAGGcGGCGCGCGGa----CCGGG- -5'
13127 3' -63.2 NC_003401.1 + 127875 0.68 0.421367
Target:  5'- gAGGACAggcgugCCGgUGCGCGCCagcugcUGGCa- -3'
miRNA:   3'- gUCCUGUa-----GGCgGCGCGCGG------ACCGgg -5'
13127 3' -63.2 NC_003401.1 + 127326 0.76 0.140775
Target:  5'- aAGGGCAUCCGCagauGCGUGC--GGCCCu -3'
miRNA:   3'- gUCCUGUAGGCGg---CGCGCGgaCCGGG- -5'
13127 3' -63.2 NC_003401.1 + 126855 0.69 0.396461
Target:  5'- cCAGG-CGuUCCGUCGCGUccuGCCUGGUg- -3'
miRNA:   3'- -GUCCuGU-AGGCGGCGCG---CGGACCGgg -5'
13127 3' -63.2 NC_003401.1 + 125138 0.68 0.46489
Target:  5'- -cGGACAugacaguuUCC-CCGUGgGCgCUGGCCUu -3'
miRNA:   3'- guCCUGU--------AGGcGGCGCgCG-GACCGGG- -5'
13127 3' -63.2 NC_003401.1 + 123358 0.67 0.51064
Target:  5'- aUAGG-CGguuuggCCGCgGCGCGgccCCUGGaCCCc -3'
miRNA:   3'- -GUCCuGUa-----GGCGgCGCGC---GGACC-GGG- -5'
13127 3' -63.2 NC_003401.1 + 122557 0.71 0.274291
Target:  5'- -uGGAaauucuuGUCCGCCGCGCcggugaGCCgcGGCCCu -3'
miRNA:   3'- guCCUg------UAGGCGGCGCG------CGGa-CCGGG- -5'
13127 3' -63.2 NC_003401.1 + 119954 0.66 0.54854
Target:  5'- -cGGug--CCGCUGCGcCGCCUccGGCCa -3'
miRNA:   3'- guCCuguaGGCGGCGC-GCGGA--CCGGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.