miRNA display CGI


Results 1 - 20 of 54 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13127 3' -63.2 NC_003401.1 + 49889 0.99 0.003318
Target:  5'- --aGACAUCCGCCGCGCGCCUGGCCCc -3'
miRNA:   3'- gucCUGUAGGCGGCGCGCGGACCGGG- -5'
13127 3' -63.2 NC_003401.1 + 10336 0.67 0.51064
Target:  5'- gAGGACcggaCGCCGUGCuGCgUGGCguCCg -3'
miRNA:   3'- gUCCUGuag-GCGGCGCG-CGgACCG--GG- -5'
13127 3' -63.2 NC_003401.1 + 84211 0.66 0.529466
Target:  5'- cCGGGAaugCCGCUGCcCGCCcccuuGCCCa -3'
miRNA:   3'- -GUCCUguaGGCGGCGcGCGGac---CGGG- -5'
13127 3' -63.2 NC_003401.1 + 93321 0.66 0.575588
Target:  5'- aUAGGACuuuUUCGCCuucgcggaaucauGCGCgggguguGCCUGGCUa -3'
miRNA:   3'- -GUCCUGu--AGGCGG-------------CGCG-------CGGACCGGg -5'
13127 3' -63.2 NC_003401.1 + 132858 0.76 0.144298
Target:  5'- cCGGGGCccucgGUCgCGCCcCGCGCCgGGCCCc -3'
miRNA:   3'- -GUCCUG-----UAG-GCGGcGCGCGGaCCGGG- -5'
13127 3' -63.2 NC_003401.1 + 132509 0.75 0.167173
Target:  5'- gGGGGCggCgGCCGCGgGCCcgGGCCg -3'
miRNA:   3'- gUCCUGuaGgCGGCGCgCGGa-CCGGg -5'
13127 3' -63.2 NC_003401.1 + 132713 0.74 0.188667
Target:  5'- --cGGCAUCgggaGCCGCGCGCCgcggcuuguggGGCCCc -3'
miRNA:   3'- gucCUGUAGg---CGGCGCGCGGa----------CCGGG- -5'
13127 3' -63.2 NC_003401.1 + 23869 0.73 0.233496
Target:  5'- --uGACGUCCGCCGCGUccaaccggcgcuGCC-GGUCCg -3'
miRNA:   3'- gucCUGUAGGCGGCGCG------------CGGaCCGGG- -5'
13127 3' -63.2 NC_003401.1 + 20270 0.7 0.35712
Target:  5'- gGGGACGcggaCGCCGCG-GCCauUGGCuCCg -3'
miRNA:   3'- gUCCUGUag--GCGGCGCgCGG--ACCG-GG- -5'
13127 3' -63.2 NC_003401.1 + 18007 0.67 0.501332
Target:  5'- gGGGAgAUCCG-CGCGUcCCUGuGCgCCg -3'
miRNA:   3'- gUCCUgUAGGCgGCGCGcGGAC-CG-GG- -5'
13127 3' -63.2 NC_003401.1 + 125138 0.68 0.46489
Target:  5'- -cGGACAugacaguuUCC-CCGUGgGCgCUGGCCUu -3'
miRNA:   3'- guCCUGU--------AGGcGGCGCgCG-GACCGGG- -5'
13127 3' -63.2 NC_003401.1 + 15211 0.7 0.34884
Target:  5'- gCAGGAgAUCuggaucaccgcguCGCCGuCGCGCgUGGCgCa -3'
miRNA:   3'- -GUCCUgUAG-------------GCGGC-GCGCGgACCGgG- -5'
13127 3' -63.2 NC_003401.1 + 106006 0.88 0.0187
Target:  5'- gAGGAgcccCAUgCCGCCGCGCGCCUGGCCa -3'
miRNA:   3'- gUCCU----GUA-GGCGGCGCGCGGACCGGg -5'
13127 3' -63.2 NC_003401.1 + 21778 0.68 0.46489
Target:  5'- -cGGcCGUCCGCUGCGCguGCCgcGGCgaCCa -3'
miRNA:   3'- guCCuGUAGGCGGCGCG--CGGa-CCG--GG- -5'
13127 3' -63.2 NC_003401.1 + 15849 0.76 0.130674
Target:  5'- -uGGcCGUCCGUCaggaCGCGCCUGGCCUg -3'
miRNA:   3'- guCCuGUAGGCGGc---GCGCGGACCGGG- -5'
13127 3' -63.2 NC_003401.1 + 132668 0.73 0.233496
Target:  5'- gGGGGCGUCggggCGCgGCGcCGCCgGGCUCg -3'
miRNA:   3'- gUCCUGUAG----GCGgCGC-GCGGaCCGGG- -5'
13127 3' -63.2 NC_003401.1 + 86653 0.67 0.495783
Target:  5'- cCAGGAgAUgucCCGCCGCGUGaCUgugcguggauuuucaUGuGCCCg -3'
miRNA:   3'- -GUCCUgUA---GGCGGCGCGC-GG---------------AC-CGGG- -5'
13127 3' -63.2 NC_003401.1 + 132741 0.67 0.52002
Target:  5'- gAGGACcgCCauGCCGgGCGC--GGCCg -3'
miRNA:   3'- gUCCUGuaGG--CGGCgCGCGgaCCGGg -5'
13127 3' -63.2 NC_003401.1 + 118114 0.76 0.133964
Target:  5'- gGGGACGguggggGCCGCGCGCCaccaugGGCCCc -3'
miRNA:   3'- gUCCUGUagg---CGGCGCGCGGa-----CCGGG- -5'
13127 3' -63.2 NC_003401.1 + 132377 0.74 0.175494
Target:  5'- cCGGcGGCGgcgCCgGCCGgGCGCCUccgGGCCCg -3'
miRNA:   3'- -GUC-CUGUa--GG-CGGCgCGCGGA---CCGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.