miRNA display CGI


Results 1 - 20 of 38 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13156 5' -50.4 NC_003401.1 + 42541 0.66 0.995734
Target:  5'- cGGaCGGCGGUCAUC---GCAaa--GCCc -3'
miRNA:   3'- -CC-GCCGCCAGUAGucuUGUauagUGG- -5'
13156 5' -50.4 NC_003401.1 + 118258 0.66 0.995734
Target:  5'- aGCGGU-GUCAgCGGAACAUAUUcuccCCg -3'
miRNA:   3'- cCGCCGcCAGUaGUCUUGUAUAGu---GG- -5'
13156 5' -50.4 NC_003401.1 + 88416 0.66 0.995528
Target:  5'- -cUGGCGGUuaccucguugcguaCGUCcaGGAGCAUGcCGCCg -3'
miRNA:   3'- ccGCCGCCA--------------GUAG--UCUUGUAUaGUGG- -5'
13156 5' -50.4 NC_003401.1 + 127483 0.66 0.995017
Target:  5'- cGUGGCGGUCAguuggcUCAGAAUgguugGUGgaaGCUg -3'
miRNA:   3'- cCGCCGCCAGU------AGUCUUG-----UAUag-UGG- -5'
13156 5' -50.4 NC_003401.1 + 28198 0.66 0.995017
Target:  5'- aGGCGGCGGUaucCAcGAugGaUA-CGCCg -3'
miRNA:   3'- -CCGCCGCCAguaGU-CUugU-AUaGUGG- -5'
13156 5' -50.4 NC_003401.1 + 125693 0.66 0.993289
Target:  5'- uGGUgaaGGCGGcCAUCAGcgcccugggaAGCGgggCACCg -3'
miRNA:   3'- -CCG---CCGCCaGUAGUC----------UUGUauaGUGG- -5'
13156 5' -50.4 NC_003401.1 + 11750 0.67 0.989834
Target:  5'- cGCGGUGGUgGUCgcgcccuuggGGGugGUGacguuuUCGCCa -3'
miRNA:   3'- cCGCCGCCAgUAG----------UCUugUAU------AGUGG- -5'
13156 5' -50.4 NC_003401.1 + 14914 0.67 0.989698
Target:  5'- aGGCGGUcgcugagGGUCG--AGAGCAUGgaACCg -3'
miRNA:   3'- -CCGCCG-------CCAGUagUCUUGUAUagUGG- -5'
13156 5' -50.4 NC_003401.1 + 43203 0.67 0.988415
Target:  5'- cGUGGUGGUCAaCGGAACggauGUGUUucuagaacaACCg -3'
miRNA:   3'- cCGCCGCCAGUaGUCUUG----UAUAG---------UGG- -5'
13156 5' -50.4 NC_003401.1 + 88454 0.67 0.988415
Target:  5'- gGGCGGuUGGUUG--GGAACAUggaggucggGUCGCCc -3'
miRNA:   3'- -CCGCC-GCCAGUagUCUUGUA---------UAGUGG- -5'
13156 5' -50.4 NC_003401.1 + 7527 0.67 0.986847
Target:  5'- uGGCGGCGGUgccgaCAUaauGGAcCAUGUuaaaCGCCu -3'
miRNA:   3'- -CCGCCGCCA-----GUAg--UCUuGUAUA----GUGG- -5'
13156 5' -50.4 NC_003401.1 + 83604 0.67 0.986847
Target:  5'- uGUGGUGGUCuGUCAGGACGa---GCUg -3'
miRNA:   3'- cCGCCGCCAG-UAGUCUUGUauagUGG- -5'
13156 5' -50.4 NC_003401.1 + 132675 0.67 0.986847
Target:  5'- gGGCccGGgGGgCGUCGGGGCGcggCGCCg -3'
miRNA:   3'- -CCG--CCgCCaGUAGUCUUGUauaGUGG- -5'
13156 5' -50.4 NC_003401.1 + 20083 0.67 0.986847
Target:  5'- gGGCGGacagcaccaCGGUCAccgCGGAGCcaAUgGCCg -3'
miRNA:   3'- -CCGCC---------GCCAGUa--GUCUUGuaUAgUGG- -5'
13156 5' -50.4 NC_003401.1 + 13660 0.67 0.985121
Target:  5'- gGGCcaGGCGGUCGcgguUCAGGucgauCGUGUUGuCCa -3'
miRNA:   3'- -CCG--CCGCCAGU----AGUCUu----GUAUAGU-GG- -5'
13156 5' -50.4 NC_003401.1 + 91077 0.67 0.985121
Target:  5'- aGGUGGCGuuuguUCAcUCAGAGCGcugcgGUCACa -3'
miRNA:   3'- -CCGCCGCc----AGU-AGUCUUGUa----UAGUGg -5'
13156 5' -50.4 NC_003401.1 + 117986 0.68 0.981157
Target:  5'- -cCGGCGGUCAgc-GAAUaAUGUUGCCg -3'
miRNA:   3'- ccGCCGCCAGUaguCUUG-UAUAGUGG- -5'
13156 5' -50.4 NC_003401.1 + 11181 0.68 0.981157
Target:  5'- aGGgGGcCGGUUAUCAGGcCGUAaaACUg -3'
miRNA:   3'- -CCgCC-GCCAGUAGUCUuGUAUagUGG- -5'
13156 5' -50.4 NC_003401.1 + 12021 0.68 0.976451
Target:  5'- -aCGGCGGUC-UCGGuccacccucGAUAgacgGUCACCg -3'
miRNA:   3'- ccGCCGCCAGuAGUC---------UUGUa---UAGUGG- -5'
13156 5' -50.4 NC_003401.1 + 105495 0.68 0.973798
Target:  5'- gGGUGGCGGcCGUCAccuGGGCGc-UCACg -3'
miRNA:   3'- -CCGCCGCCaGUAGU---CUUGUauAGUGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.