miRNA display CGI


Results 1 - 20 of 38 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13160 5' -54.3 NC_003401.1 + 71722 0.66 0.948625
Target:  5'- uUGUCu--GUC-CGGAACCGUCcAGGc -3'
miRNA:   3'- gACAGuuuCGGcGCCUUGGCGGuUCC- -5'
13160 5' -54.3 NC_003401.1 + 20099 0.66 0.948625
Target:  5'- -gGUCA---CCGCGGAGCCaaugGCCGcGGc -3'
miRNA:   3'- gaCAGUuucGGCGCCUUGG----CGGUuCC- -5'
13160 5' -54.3 NC_003401.1 + 48592 0.66 0.948193
Target:  5'- -cGgCAAcGGCCGCGGAucuugccGCUGCCAcuuGGu -3'
miRNA:   3'- gaCaGUU-UCGGCGCCU-------UGGCGGUu--CC- -5'
13160 5' -54.3 NC_003401.1 + 58742 0.66 0.939527
Target:  5'- -gGUUuAAcUCGUGGuauGCCGCCAAGGu -3'
miRNA:   3'- gaCAGuUUcGGCGCCu--UGGCGGUUCC- -5'
13160 5' -54.3 NC_003401.1 + 8820 0.66 0.934613
Target:  5'- gUGgCGAuuGCCGCGGAGCCcaGCacguGGGg -3'
miRNA:   3'- gACaGUUu-CGGCGCCUUGG--CGgu--UCC- -5'
13160 5' -54.3 NC_003401.1 + 21475 0.66 0.934613
Target:  5'- -cGgcgCAGGGCUuCgGGGACCGCCGcgAGGg -3'
miRNA:   3'- gaCa--GUUUCGGcG-CCUUGGCGGU--UCC- -5'
13160 5' -54.3 NC_003401.1 + 84219 0.66 0.929452
Target:  5'- -gGUUAGAGCCG-GGAauGCCGCUg--- -3'
miRNA:   3'- gaCAGUUUCGGCgCCU--UGGCGGuucc -5'
13160 5' -54.3 NC_003401.1 + 132614 0.66 0.929452
Target:  5'- -aGUCGgccGGGCCcgGCGGAGCgGCaccCGGGGg -3'
miRNA:   3'- gaCAGU---UUCGG--CGCCUUGgCG---GUUCC- -5'
13160 5' -54.3 NC_003401.1 + 132531 0.66 0.929452
Target:  5'- -cGgcgCGcGG-CGCGGGGCgGCCGGGGg -3'
miRNA:   3'- gaCa--GUuUCgGCGCCUUGgCGGUUCC- -5'
13160 5' -54.3 NC_003401.1 + 66876 0.67 0.924046
Target:  5'- gCUGUCAAAGgUGCGcGAgcGCC-CCAGGc -3'
miRNA:   3'- -GACAGUUUCgGCGC-CU--UGGcGGUUCc -5'
13160 5' -54.3 NC_003401.1 + 60504 0.67 0.924046
Target:  5'- gUGUCGccGUCGgGGGugCGCCugacaauAGGc -3'
miRNA:   3'- gACAGUuuCGGCgCCUugGCGGu------UCC- -5'
13160 5' -54.3 NC_003401.1 + 71655 0.67 0.923491
Target:  5'- -gGUCAaaauaaaGAGCCGCcuGGGACagcaCCGAGGg -3'
miRNA:   3'- gaCAGU-------UUCGGCG--CCUUGgc--GGUUCC- -5'
13160 5' -54.3 NC_003401.1 + 12446 0.67 0.912494
Target:  5'- uUGU--GAGCaCGCGGG--CGCCGAGGc -3'
miRNA:   3'- gACAguUUCG-GCGCCUugGCGGUUCC- -5'
13160 5' -54.3 NC_003401.1 + 118889 0.67 0.912494
Target:  5'- -gGagGAAGCCGC---GCCGCCAAGcGg -3'
miRNA:   3'- gaCagUUUCGGCGccuUGGCGGUUC-C- -5'
13160 5' -54.3 NC_003401.1 + 120884 0.67 0.906351
Target:  5'- aUGcaaAAAGCCGggaugaCGGGACUGCCAGGu -3'
miRNA:   3'- gACag-UUUCGGC------GCCUUGGCGGUUCc -5'
13160 5' -54.3 NC_003401.1 + 124993 0.67 0.899315
Target:  5'- aCUGUCAuguccgcAAGCUcggGCGGcAcguacgcccACUGCCAGGGg -3'
miRNA:   3'- -GACAGU-------UUCGG---CGCC-U---------UGGCGGUUCC- -5'
13160 5' -54.3 NC_003401.1 + 132689 0.68 0.886482
Target:  5'- -cGgCGGGGCCcggcGCGGGGCgCGaCCGAGGg -3'
miRNA:   3'- gaCaGUUUCGG----CGCCUUG-GC-GGUUCC- -5'
13160 5' -54.3 NC_003401.1 + 98687 0.68 0.886482
Target:  5'- -cGUCuccAGCC-CGGGauucGCCGCCGAGu -3'
miRNA:   3'- gaCAGuu-UCGGcGCCU----UGGCGGUUCc -5'
13160 5' -54.3 NC_003401.1 + 22232 0.68 0.886482
Target:  5'- gCUGcCAAGGCCcucuuCGGAAUCGUCAaucAGGc -3'
miRNA:   3'- -GACaGUUUCGGc----GCCUUGGCGGU---UCC- -5'
13160 5' -54.3 NC_003401.1 + 22824 0.68 0.886482
Target:  5'- -cGUCGAggcgggcccgGGCCGCGGGuauuaauggacGCCGUCAAc- -3'
miRNA:   3'- gaCAGUU----------UCGGCGCCU-----------UGGCGGUUcc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.