Results 1 - 20 of 102 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
13161 | 5' | -71.5 | NC_003401.1 | + | 23409 | 0.66 | 0.30091 |
Target: 5'- uCUUUCgGUGCCCUCCGaaCGacccggaaaaaucCCCGCCGCg -3' miRNA: 3'- -GGGGGgCGCGGGGGGC--GC-------------GGGCGGCG- -5' |
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13161 | 5' | -71.5 | NC_003401.1 | + | 133539 | 0.66 | 0.271419 |
Target: 5'- --aCCCGgGCCucuCCCC-CGCCCGgaCCGCc -3' miRNA: 3'- gggGGGCgCGG---GGGGcGCGGGC--GGCG- -5' |
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13161 | 5' | -71.5 | NC_003401.1 | + | 127672 | 0.66 | 0.295313 |
Target: 5'- aCCUgCgGCGCUCCCCagguaaagcgaGCGCUgGuuGCc -3' miRNA: 3'- -GGGgGgCGCGGGGGG-----------CGCGGgCggCG- -5' |
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13161 | 5' | -71.5 | NC_003401.1 | + | 87814 | 0.66 | 0.295313 |
Target: 5'- ---gCCGCaUCCCCCaCGCCCGCCa- -3' miRNA: 3'- ggggGGCGcGGGGGGcGCGGGCGGcg -5' |
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13161 | 5' | -71.5 | NC_003401.1 | + | 89273 | 0.66 | 0.277243 |
Target: 5'- cCCCUCUGCGUcguUCCCUGCGCagCGaaCCGUg -3' miRNA: 3'- -GGGGGGCGCG---GGGGGCGCGg-GC--GGCG- -5' |
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13161 | 5' | -71.5 | NC_003401.1 | + | 71816 | 0.66 | 0.28919 |
Target: 5'- aCCCUggaacgCGCGCCCCCaCGCGUUCauuaUGCa -3' miRNA: 3'- gGGGG------GCGCGGGGG-GCGCGGGcg--GCG- -5' |
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13161 | 5' | -71.5 | NC_003401.1 | + | 122141 | 0.66 | 0.295313 |
Target: 5'- uCCacgaCCCGCaGCCaCCUgaGCGCgCGCaCGCa -3' miRNA: 3'- -GGg---GGGCG-CGG-GGGg-CGCGgGCG-GCG- -5' |
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13161 | 5' | -71.5 | NC_003401.1 | + | 8654 | 0.66 | 0.301536 |
Target: 5'- aCCCCCaCGUGCUgggCUCCGCGgcaaUCGCCa- -3' miRNA: 3'- -GGGGG-GCGCGG---GGGGCGCg---GGCGGcg -5' |
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13161 | 5' | -71.5 | NC_003401.1 | + | 132809 | 0.66 | 0.283167 |
Target: 5'- -gCCCCG-GCCCCCCuC-CCgGCgGCg -3' miRNA: 3'- ggGGGGCgCGGGGGGcGcGGgCGgCG- -5' |
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13161 | 5' | -71.5 | NC_003401.1 | + | 118279 | 0.66 | 0.271419 |
Target: 5'- uCUCCCCG-GCUCCCga-GCCCGgggcCCGCg -3' miRNA: 3'- -GGGGGGCgCGGGGGgcgCGGGC----GGCG- -5' |
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13161 | 5' | -71.5 | NC_003401.1 | + | 107064 | 0.66 | 0.271419 |
Target: 5'- aCUCCCaGCGCCCCCCaa-CCaaCCGCa -3' miRNA: 3'- gGGGGG-CGCGGGGGGcgcGGgcGGCG- -5' |
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13161 | 5' | -71.5 | NC_003401.1 | + | 17517 | 0.66 | 0.271419 |
Target: 5'- gCCCCCGgGUucgugcuggacUCCUCuCGCCCGCUGa -3' miRNA: 3'- gGGGGGCgCG-----------GGGGGcGCGGGCGGCg -5' |
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13161 | 5' | -71.5 | NC_003401.1 | + | 132479 | 0.66 | 0.270842 |
Target: 5'- aCUCCCgggaGCGCCCCgguccggCCGaGCCCgGCgGCg -3' miRNA: 3'- -GGGGGg---CGCGGGG-------GGCgCGGG-CGgCG- -5' |
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13161 | 5' | -71.5 | NC_003401.1 | + | 107604 | 0.66 | 0.265694 |
Target: 5'- aCCCUaugccagaaGaCGCCacgcuCCCGgGUCCGCCGCc -3' miRNA: 3'- gGGGGg--------C-GCGGg----GGGCgCGGGCGGCG- -5' |
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13161 | 5' | -71.5 | NC_003401.1 | + | 9338 | 0.66 | 0.260067 |
Target: 5'- gCCCCCCGaggaacagcuacCGaCCCCuaGCGCCgG-CGCc -3' miRNA: 3'- -GGGGGGC------------GC-GGGGggCGCGGgCgGCG- -5' |
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13161 | 5' | -71.5 | NC_003401.1 | + | 17651 | 0.66 | 0.28919 |
Target: 5'- gCCaCgCGCGCCgCgUCCGCGUcgCCGCCGg -3' miRNA: 3'- gGG-GgGCGCGG-G-GGGCGCG--GGCGGCg -5' |
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13161 | 5' | -71.5 | NC_003401.1 | + | 23994 | 0.66 | 0.277243 |
Target: 5'- aCCCaaCGCGCCCauuggcugccgCCaGCGUCCaaugGCCGCg -3' miRNA: 3'- -GGGggGCGCGGG-----------GGgCGCGGG----CGGCG- -5' |
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13161 | 5' | -71.5 | NC_003401.1 | + | 21782 | 0.66 | 0.260067 |
Target: 5'- gCCgCgGcCGUCCgCUGCGCgUGCCGCg -3' miRNA: 3'- gGGgGgC-GCGGGgGGCGCGgGCGGCG- -5' |
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13161 | 5' | -71.5 | NC_003401.1 | + | 49885 | 0.66 | 0.271419 |
Target: 5'- aUCCgCCGCGCgCCUgGC-CCCGCaCGa -3' miRNA: 3'- -GGGgGGCGCGgGGGgCGcGGGCG-GCg -5' |
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13161 | 5' | -71.5 | NC_003401.1 | + | 86356 | 0.67 | 0.233381 |
Target: 5'- gUCCCCGCuGUcauCUCCCGCgGCaCCGuuGCu -3' miRNA: 3'- gGGGGGCG-CG---GGGGGCG-CG-GGCggCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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