miRNA display CGI


Results 1 - 20 of 102 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13161 5' -71.5 NC_003401.1 + 69605 0.68 0.209035
Target:  5'- gCUCUC-CGCCCUUCGcCGaaaCCGCCGCa -3'
miRNA:   3'- gGGGGGcGCGGGGGGC-GCg--GGCGGCG- -5'
13161 5' -71.5 NC_003401.1 + 88357 0.7 0.155803
Target:  5'- gCUCCCCGuCGCCUCCCacgGCGCCU-UCGUa -3'
miRNA:   3'- -GGGGGGC-GCGGGGGG---CGCGGGcGGCG- -5'
13161 5' -71.5 NC_003401.1 + 18302 0.69 0.163111
Target:  5'- gCCgCCGCGCCcugCCCCGUggugcgauuaaGCuCCGCCGa -3'
miRNA:   3'- gGGgGGCGCGG---GGGGCG-----------CG-GGCGGCg -5'
13161 5' -71.5 NC_003401.1 + 118847 0.69 0.163111
Target:  5'- aUCCCCCGUgcgcaucgccGCCCUCCuCGCCuCGgUGCa -3'
miRNA:   3'- -GGGGGGCG----------CGGGGGGcGCGG-GCgGCG- -5'
13161 5' -71.5 NC_003401.1 + 92478 0.69 0.170725
Target:  5'- aCgCCCGCGUCCCCCaCGCUggagaGCaCGCu -3'
miRNA:   3'- gGgGGGCGCGGGGGGcGCGGg----CG-GCG- -5'
13161 5' -71.5 NC_003401.1 + 132223 0.69 0.174651
Target:  5'- gCCCggCCgGCGCCgCCgCCGgGCCgCGgCCGCc -3'
miRNA:   3'- -GGG--GGgCGCGG-GG-GGCgCGG-GC-GGCG- -5'
13161 5' -71.5 NC_003401.1 + 122419 0.69 0.186913
Target:  5'- uUCCgCCGCGCagCgCGCGgCCGCUGCc -3'
miRNA:   3'- -GGGgGGCGCGggGgGCGCgGGCGGCG- -5'
13161 5' -71.5 NC_003401.1 + 28832 0.68 0.199927
Target:  5'- gCCgCUCGCgaGUCCCCCGCGa--GCCGUg -3'
miRNA:   3'- -GGgGGGCG--CGGGGGGCGCgggCGGCG- -5'
13161 5' -71.5 NC_003401.1 + 21311 0.68 0.199927
Target:  5'- gCCCUCGCGgCgguCCCCGaaGCCCugcGCCGCc -3'
miRNA:   3'- gGGGGGCGCgG---GGGGCg-CGGG---CGGCG- -5'
13161 5' -71.5 NC_003401.1 + 24603 0.7 0.152261
Target:  5'- aCgCCCCGCGCUgcggcuuuugUUCCuaGCCCGCuCGCa -3'
miRNA:   3'- -GgGGGGCGCGG----------GGGGcgCGGGCG-GCG- -5'
13161 5' -71.5 NC_003401.1 + 22119 0.72 0.115141
Target:  5'- aCCCUCUGCGUCCCgaGCcauucGCCCaGCUGCg -3'
miRNA:   3'- -GGGGGGCGCGGGGggCG-----CGGG-CGGCG- -5'
13161 5' -71.5 NC_003401.1 + 72370 0.72 0.102316
Target:  5'- uCCUCCUgaGCGCCCCguCCGCGCUgGCaGCg -3'
miRNA:   3'- -GGGGGG--CGCGGGG--GGCGCGGgCGgCG- -5'
13161 5' -71.5 NC_003401.1 + 132520 0.83 0.016792
Target:  5'- gCgCCCCGaCGCCCCCCGgGCCCggggccccacaaGCCGCg -3'
miRNA:   3'- -GgGGGGC-GCGGGGGGCgCGGG------------CGGCG- -5'
13161 5' -71.5 NC_003401.1 + 117752 0.81 0.021357
Target:  5'- aCCCCCGCGCCCguucggcgugaccuCgCCGCGacCCCGCCGCc -3'
miRNA:   3'- gGGGGGCGCGGG--------------G-GGCGC--GGGCGGCG- -5'
13161 5' -71.5 NC_003401.1 + 132340 0.81 0.023174
Target:  5'- uCCgCCCCGCcgGCCCgggCCCGCGgCCGCCGCc -3'
miRNA:   3'- -GG-GGGGCG--CGGG---GGGCGCgGGCGGCG- -5'
13161 5' -71.5 NC_003401.1 + 132371 0.8 0.028944
Target:  5'- nCCCCCG-GCCgCCCCGCGCCgcgCGCCGg -3'
miRNA:   3'- gGGGGGCgCGG-GGGGCGCGG---GCGGCg -5'
13161 5' -71.5 NC_003401.1 + 121968 0.78 0.04074
Target:  5'- cCCCCugCCGCGCCUCCCG-GCcuguucucuagugCCGCCGCg -3'
miRNA:   3'- -GGGG--GGCGCGGGGGGCgCG-------------GGCGGCG- -5'
13161 5' -71.5 NC_003401.1 + 14068 0.75 0.064886
Target:  5'- aCCCUCUaGCGCCCCCgGgCGUCCGCgGUc -3'
miRNA:   3'- -GGGGGG-CGCGGGGGgC-GCGGGCGgCG- -5'
13161 5' -71.5 NC_003401.1 + 132623 0.73 0.08456
Target:  5'- uCCCCCaCGcCGCCCCgaaagguggucuCCGCGC-CGCCGg -3'
miRNA:   3'- -GGGGG-GC-GCGGGG------------GGCGCGgGCGGCg -5'
13161 5' -71.5 NC_003401.1 + 132447 0.72 0.099918
Target:  5'- gCCCCCGggugcCGCUCCgCCGgGCCCgGCCGa -3'
miRNA:   3'- gGGGGGC-----GCGGGG-GGCgCGGG-CGGCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.