miRNA display CGI


Results 1 - 20 of 102 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13161 5' -71.5 NC_003401.1 + 163 0.69 0.174651
Target:  5'- gUCCCCCGCuCCCCUCGCGUuuUC-CCGa -3'
miRNA:   3'- -GGGGGGCGcGGGGGGCGCG--GGcGGCg -5'
13161 5' -71.5 NC_003401.1 + 8210 0.67 0.238527
Target:  5'- -aCCCCGUGaggaCCCCGCGgucgagaCaCGCCGCu -3'
miRNA:   3'- ggGGGGCGCgg--GGGGCGCg------G-GCGGCG- -5'
13161 5' -71.5 NC_003401.1 + 8654 0.66 0.301536
Target:  5'- aCCCCCaCGUGCUgggCUCCGCGgcaaUCGCCa- -3'
miRNA:   3'- -GGGGG-GCGCGG---GGGGCGCg---GGCGGcg -5'
13161 5' -71.5 NC_003401.1 + 9338 0.66 0.260067
Target:  5'- gCCCCCCGaggaacagcuacCGaCCCCuaGCGCCgG-CGCc -3'
miRNA:   3'- -GGGGGGC------------GC-GGGGggCGCGGgCgGCG- -5'
13161 5' -71.5 NC_003401.1 + 10895 0.68 0.213723
Target:  5'- uUCgUCGCGCUUCCCugggagGCGCgCUGCCGCu -3'
miRNA:   3'- gGGgGGCGCGGGGGG------CGCG-GGCGGCG- -5'
13161 5' -71.5 NC_003401.1 + 11042 0.68 0.217057
Target:  5'- gCCCCCugaCGCGCCagagcgaucucuuuCCCgGC-CCCGCCa- -3'
miRNA:   3'- -GGGGG---GCGCGG--------------GGGgCGcGGGCGGcg -5'
13161 5' -71.5 NC_003401.1 + 14068 0.75 0.064886
Target:  5'- aCCCUCUaGCGCCCCCgGgCGUCCGCgGUc -3'
miRNA:   3'- -GGGGGG-CGCGGGGGgC-GCGGGCGgCG- -5'
13161 5' -71.5 NC_003401.1 + 14174 0.68 0.213723
Target:  5'- gCUCCCGC-CCCugCCgGCGCCggaGCCGUu -3'
miRNA:   3'- gGGGGGCGcGGG--GGgCGCGGg--CGGCG- -5'
13161 5' -71.5 NC_003401.1 + 17517 0.66 0.271419
Target:  5'- gCCCCCGgGUucgugcuggacUCCUCuCGCCCGCUGa -3'
miRNA:   3'- gGGGGGCgCG-----------GGGGGcGCGGGCGGCg -5'
13161 5' -71.5 NC_003401.1 + 17651 0.66 0.28919
Target:  5'- gCCaCgCGCGCCgCgUCCGCGUcgCCGCCGg -3'
miRNA:   3'- gGG-GgGCGCGG-G-GGGCGCG--GGCGGCg -5'
13161 5' -71.5 NC_003401.1 + 18302 0.69 0.163111
Target:  5'- gCCgCCGCGCCcugCCCCGUggugcgauuaaGCuCCGCCGa -3'
miRNA:   3'- gGGgGGCGCGG---GGGGCG-----------CG-GGCGGCg -5'
13161 5' -71.5 NC_003401.1 + 20608 0.68 0.209035
Target:  5'- gCCCUacgcugGCGCCUCCCcCGaCUGCCGCu -3'
miRNA:   3'- gGGGGg-----CGCGGGGGGcGCgGGCGGCG- -5'
13161 5' -71.5 NC_003401.1 + 21043 0.73 0.083955
Target:  5'- aUCCCCUGCuGCUucagcugcggaggaCCCCGCGUCCGuuuCCGCg -3'
miRNA:   3'- -GGGGGGCG-CGG--------------GGGGCGCGGGC---GGCG- -5'
13161 5' -71.5 NC_003401.1 + 21311 0.68 0.199927
Target:  5'- gCCCUCGCGgCgguCCCCGaaGCCCugcGCCGCc -3'
miRNA:   3'- gGGGGGCGCgG---GGGGCg-CGGG---CGGCG- -5'
13161 5' -71.5 NC_003401.1 + 21492 0.67 0.24324
Target:  5'- -gUCCCGCGCCUUuuuggCgGCGCagggcuucggggaCCGCCGCg -3'
miRNA:   3'- ggGGGGCGCGGGG-----GgCGCG-------------GGCGGCG- -5'
13161 5' -71.5 NC_003401.1 + 21782 0.66 0.260067
Target:  5'- gCCgCgGcCGUCCgCUGCGCgUGCCGCg -3'
miRNA:   3'- gGGgGgC-GCGGGgGGCGCGgGCGGCG- -5'
13161 5' -71.5 NC_003401.1 + 22119 0.72 0.115141
Target:  5'- aCCCUCUGCGUCCCgaGCcauucGCCCaGCUGCg -3'
miRNA:   3'- -GGGGGGCGCGGGGggCG-----CGGG-CGGCG- -5'
13161 5' -71.5 NC_003401.1 + 23009 0.67 0.254538
Target:  5'- gCCCUuuGgGCCCCgCGCGUCUGggggUGCg -3'
miRNA:   3'- -GGGGggCgCGGGGgGCGCGGGCg---GCG- -5'
13161 5' -71.5 NC_003401.1 + 23409 0.66 0.30091
Target:  5'- uCUUUCgGUGCCCUCCGaaCGacccggaaaaaucCCCGCCGCg -3'
miRNA:   3'- -GGGGGgCGCGGGGGGC--GC-------------GGGCGGCG- -5'
13161 5' -71.5 NC_003401.1 + 23785 0.67 0.25399
Target:  5'- gCCgCUCGCGgCgCCCGUguuuuugGCCUGCUGCc -3'
miRNA:   3'- -GGgGGGCGCgGgGGGCG-------CGGGCGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.