miRNA display CGI


Results 1 - 20 of 102 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13161 5' -71.5 NC_003401.1 + 121311 1.11 0.000108
Target:  5'- gCCCCCCGCGCCCCCCGCGCCCGCCGCg -3'
miRNA:   3'- -GGGGGGCGCGGGGGGCGCGGGCGGCG- -5'
13161 5' -71.5 NC_003401.1 + 132278 0.94 0.002342
Target:  5'- uCCCCCgCGCGCCCCCCGgGCCCGCgCGCc -3'
miRNA:   3'- -GGGGG-GCGCGGGGGGCgCGGGCG-GCG- -5'
13161 5' -71.5 NC_003401.1 + 132520 0.83 0.016792
Target:  5'- gCgCCCCGaCGCCCCCCGgGCCCggggccccacaaGCCGCg -3'
miRNA:   3'- -GgGGGGC-GCGGGGGGCgCGGG------------CGGCG- -5'
13161 5' -71.5 NC_003401.1 + 117752 0.81 0.021357
Target:  5'- aCCCCCGCGCCCguucggcgugaccuCgCCGCGacCCCGCCGCc -3'
miRNA:   3'- gGGGGGCGCGGG--------------G-GGCGC--GGGCGGCG- -5'
13161 5' -71.5 NC_003401.1 + 132340 0.81 0.023174
Target:  5'- uCCgCCCCGCcgGCCCgggCCCGCGgCCGCCGCc -3'
miRNA:   3'- -GG-GGGGCG--CGGG---GGGCGCgGGCGGCG- -5'
13161 5' -71.5 NC_003401.1 + 132371 0.8 0.028944
Target:  5'- nCCCCCG-GCCgCCCCGCGCCgcgCGCCGg -3'
miRNA:   3'- gGGGGGCgCGG-GGGGCGCGG---GCGGCg -5'
13161 5' -71.5 NC_003401.1 + 121968 0.78 0.04074
Target:  5'- cCCCCugCCGCGCCUCCCG-GCcuguucucuagugCCGCCGCg -3'
miRNA:   3'- -GGGG--GGCGCGGGGGGCgCG-------------GGCGGCG- -5'
13161 5' -71.5 NC_003401.1 + 122079 0.77 0.044822
Target:  5'- gCCgCaCCCGCGCCCCCCGCuCCaacaacaucaggGCCGCa -3'
miRNA:   3'- -GG-G-GGGCGCGGGGGGCGcGGg-----------CGGCG- -5'
13161 5' -71.5 NC_003401.1 + 27755 0.77 0.046157
Target:  5'- gCCCCCCGCGCUggCgCGUGCCCGCCc- -3'
miRNA:   3'- -GGGGGGCGCGGg-GgGCGCGGGCGGcg -5'
13161 5' -71.5 NC_003401.1 + 118357 0.76 0.049665
Target:  5'- aCCCCCaGCGCCCgCgGUG-CCGCCGCc -3'
miRNA:   3'- gGGGGG-CGCGGGgGgCGCgGGCGGCG- -5'
13161 5' -71.5 NC_003401.1 + 132578 0.75 0.063334
Target:  5'- -gCCCCG-GCCCCCCGCGggaccCCCGgccCCGCg -3'
miRNA:   3'- ggGGGGCgCGGGGGGCGC-----GGGC---GGCG- -5'
13161 5' -71.5 NC_003401.1 + 14068 0.75 0.064886
Target:  5'- aCCCUCUaGCGCCCCCgGgCGUCCGCgGUc -3'
miRNA:   3'- -GGGGGG-CGCGGGGGgC-GCGGGCGgCG- -5'
13161 5' -71.5 NC_003401.1 + 21043 0.73 0.083955
Target:  5'- aUCCCCUGCuGCUucagcugcggaggaCCCCGCGUCCGuuuCCGCg -3'
miRNA:   3'- -GGGGGGCG-CGG--------------GGGGCGCGGGC---GGCG- -5'
13161 5' -71.5 NC_003401.1 + 132623 0.73 0.08456
Target:  5'- uCCCCCaCGcCGCCCCgaaagguggucuCCGCGC-CGCCGg -3'
miRNA:   3'- -GGGGG-GC-GCGGGG------------GGCGCGgGCGGCg -5'
13161 5' -71.5 NC_003401.1 + 132853 0.73 0.095279
Target:  5'- gCCCUcggUCGCGCCCCgcgCCGgGcCCCGCCGa -3'
miRNA:   3'- -GGGG---GGCGCGGGG---GGCgC-GGGCGGCg -5'
13161 5' -71.5 NC_003401.1 + 132447 0.72 0.099918
Target:  5'- gCCCCCGggugcCGCUCCgCCGgGCCCgGCCGa -3'
miRNA:   3'- gGGGGGC-----GCGGGG-GGCgCGGG-CGGCg -5'
13161 5' -71.5 NC_003401.1 + 72370 0.72 0.102316
Target:  5'- uCCUCCUgaGCGCCCCguCCGCGCUgGCaGCg -3'
miRNA:   3'- -GGGGGG--CGCGGGG--GGCGCGGgCGgCG- -5'
13161 5' -71.5 NC_003401.1 + 115434 0.72 0.104768
Target:  5'- cCCCaCCCGgaGCCaCCCCGgaGCCgaGCCGCu -3'
miRNA:   3'- -GGG-GGGCg-CGG-GGGGCg-CGGg-CGGCG- -5'
13161 5' -71.5 NC_003401.1 + 132898 0.72 0.10984
Target:  5'- gUCCCCCGCuCCCCUCGCGuuuuCCCGaucccCCGUu -3'
miRNA:   3'- -GGGGGGCGcGGGGGGCGC----GGGC-----GGCG- -5'
13161 5' -71.5 NC_003401.1 + 22119 0.72 0.115141
Target:  5'- aCCCUCUGCGUCCCgaGCcauucGCCCaGCUGCg -3'
miRNA:   3'- -GGGGGGCGCGGGGggCG-----CGGG-CGGCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.