miRNA display CGI


Results 1 - 20 of 53 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13179 3' -50 NC_003401.1 + 14412 0.66 0.996692
Target:  5'- uUCAcgcguACGACGUcGuuGAAAcaacguacGCGGCGGAc -3'
miRNA:   3'- -AGU-----UGCUGCGaCggCUUU--------UGCUGUCU- -5'
13179 3' -50 NC_003401.1 + 121769 0.66 0.996692
Target:  5'- gCGACGGCGUUGgaGAucccaacacGAUGACGGAc -3'
miRNA:   3'- aGUUGCUGCGACggCUu--------UUGCUGUCU- -5'
13179 3' -50 NC_003401.1 + 122434 0.66 0.996637
Target:  5'- --cGCGGcCGCUGCCGAAAccaACGccgcuugaauuucGCGGGc -3'
miRNA:   3'- aguUGCU-GCGACGGCUUU---UGC-------------UGUCU- -5'
13179 3' -50 NC_003401.1 + 105287 0.66 0.996103
Target:  5'- aUCGACGGCGgUGCuCGguAACuuCGGGa -3'
miRNA:   3'- -AGUUGCUGCgACG-GCuuUUGcuGUCU- -5'
13179 3' -50 NC_003401.1 + 128164 0.66 0.996103
Target:  5'- --cACGcUGCUGcCCGggGGCGAaauCAGAu -3'
miRNA:   3'- aguUGCuGCGAC-GGCuuUUGCU---GUCU- -5'
13179 3' -50 NC_003401.1 + 23545 0.66 0.996103
Target:  5'- gUggUGGCGCUGgCGAAGAUaguggccGCAGAg -3'
miRNA:   3'- aGuuGCUGCGACgGCUUUUGc------UGUCU- -5'
13179 3' -50 NC_003401.1 + 6274 0.66 0.99604
Target:  5'- aCAccACGACGCUcGCCGuuaagguGACGugcuuucACAGAg -3'
miRNA:   3'- aGU--UGCUGCGA-CGGCuu-----UUGC-------UGUCU- -5'
13179 3' -50 NC_003401.1 + 19293 0.66 0.99571
Target:  5'- gUUGACGGCGCUGCgcuggucguuguccaUGAucAGGCGGCAa- -3'
miRNA:   3'- -AGUUGCUGCGACG---------------GCU--UUUGCUGUcu -5'
13179 3' -50 NC_003401.1 + 82595 0.66 0.995431
Target:  5'- aUCGguGCGGCGCauaugUGCCcuuGAGGGCGACGu- -3'
miRNA:   3'- -AGU--UGCUGCG-----ACGG---CUUUUGCUGUcu -5'
13179 3' -50 NC_003401.1 + 125679 0.66 0.995431
Target:  5'- gUCGAaccCGACGUUGgUGAAGGCGGCc-- -3'
miRNA:   3'- -AGUU---GCUGCGACgGCUUUUGCUGucu -5'
13179 3' -50 NC_003401.1 + 60598 0.66 0.995431
Target:  5'- -aAACGuACGCUuCCGGAGACGuuacgauaucGCGGAu -3'
miRNA:   3'- agUUGC-UGCGAcGGCUUUUGC----------UGUCU- -5'
13179 3' -50 NC_003401.1 + 23705 0.66 0.994668
Target:  5'- cCGGCaGCGCcgGuuGGAcGCGGCGGAc -3'
miRNA:   3'- aGUUGcUGCGa-CggCUUuUGCUGUCU- -5'
13179 3' -50 NC_003401.1 + 128606 0.66 0.993804
Target:  5'- aCAGCGgccucgauagaACGUUGCgguuaGAGGugGGCAGAc -3'
miRNA:   3'- aGUUGC-----------UGCGACGg----CUUUugCUGUCU- -5'
13179 3' -50 NC_003401.1 + 119777 0.66 0.993804
Target:  5'- cCGACGGCcuccGCcaaucugGCCGGAGGCGGCGc- -3'
miRNA:   3'- aGUUGCUG----CGa------CGGCUUUUGCUGUcu -5'
13179 3' -50 NC_003401.1 + 125816 0.67 0.992832
Target:  5'- uUCGACGuCGCgGCCGucuccaccGACGACcuuAGAg -3'
miRNA:   3'- -AGUUGCuGCGaCGGCuu------UUGCUG---UCU- -5'
13179 3' -50 NC_003401.1 + 12899 0.67 0.992832
Target:  5'- -gGGCGugG-UGCCGAGAACagGugAGGg -3'
miRNA:   3'- agUUGCugCgACGGCUUUUG--CugUCU- -5'
13179 3' -50 NC_003401.1 + 27702 0.67 0.992832
Target:  5'- gCGugGugGCUcGCCGGcuGCGGgGGc -3'
miRNA:   3'- aGUugCugCGA-CGGCUuuUGCUgUCu -5'
13179 3' -50 NC_003401.1 + 122141 0.67 0.991741
Target:  5'- gCGGCGGCaCUagagaacagGCCGGGAggcGCGGCAGGg -3'
miRNA:   3'- aGUUGCUGcGA---------CGGCUUU---UGCUGUCU- -5'
13179 3' -50 NC_003401.1 + 72128 0.67 0.991741
Target:  5'- gUAugGACGCUGCaCGGGAccucaaGCGuccguguCAGAc -3'
miRNA:   3'- aGUugCUGCGACG-GCUUU------UGCu------GUCU- -5'
13179 3' -50 NC_003401.1 + 97915 0.67 0.990523
Target:  5'- aCAAuuCGugGUgGCCGGuaaccAGACGACGGGc -3'
miRNA:   3'- aGUU--GCugCGaCGGCU-----UUUGCUGUCU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.