miRNA display CGI


Results 1 - 20 of 89 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13190 3' -62.3 NC_003401.1 + 133553 0.69 0.431596
Target:  5'- --cCCGCccgGACCGCCgGGCaCC-CGGCCc -3'
miRNA:   3'- cuuGGCG---CUGGCGGaCCG-GGcGCUGG- -5'
13190 3' -62.3 NC_003401.1 + 132794 0.67 0.540813
Target:  5'- -cACCGgguaCGGCUGCCUGccuGCUCGCuGGCCu -3'
miRNA:   3'- cuUGGC----GCUGGCGGAC---CGGGCG-CUGG- -5'
13190 3' -62.3 NC_003401.1 + 132727 0.72 0.290924
Target:  5'- cGGgCGCGGCCGCCcGGCaucgggagccgcgcgCCGCGGCUu -3'
miRNA:   3'- cUUgGCGCUGGCGGaCCG---------------GGCGCUGG- -5'
13190 3' -62.3 NC_003401.1 + 132660 0.69 0.44022
Target:  5'- cGGGgCGCGgcGCCGCCgGGCUCGgccgGACCg -3'
miRNA:   3'- -CUUgGCGC--UGGCGGaCCGGGCg---CUGG- -5'
13190 3' -62.3 NC_003401.1 + 132650 0.7 0.385203
Target:  5'- --uCCGCG-CCGCCgggaggggggccggGGCCCGgGGCg -3'
miRNA:   3'- cuuGGCGCuGGCGGa-------------CCGGGCgCUGg -5'
13190 3' -62.3 NC_003401.1 + 132576 0.67 0.579381
Target:  5'- -uGCCggGCGGCCGCCgcccGGCauggcgguccuCCGcCGGCCu -3'
miRNA:   3'- cuUGG--CGCUGGCGGa---CCG-----------GGC-GCUGG- -5'
13190 3' -62.3 NC_003401.1 + 132547 0.68 0.521847
Target:  5'- cGAACCGaaaGCgGCCcGGCgCGCGGCg -3'
miRNA:   3'- -CUUGGCgc-UGgCGGaCCGgGCGCUGg -5'
13190 3' -62.3 NC_003401.1 + 132516 0.72 0.315099
Target:  5'- -cGCCGCGccccgaCGCCccccgGGCCCGgGGCCc -3'
miRNA:   3'- cuUGGCGCug----GCGGa----CCGGGCgCUGG- -5'
13190 3' -62.3 NC_003401.1 + 132508 0.77 0.134749
Target:  5'- gGGGCgGCGGCCGCg-GGCCCG-GGCCg -3'
miRNA:   3'- -CUUGgCGCUGGCGgaCCGGGCgCUGG- -5'
13190 3' -62.3 NC_003401.1 + 132456 0.72 0.294851
Target:  5'- -uGCCGCu-CCGCCgGGCCCGgcCGACUc -3'
miRNA:   3'- cuUGGCGcuGGCGGaCCGGGC--GCUGG- -5'
13190 3' -62.3 NC_003401.1 + 132393 0.69 0.41465
Target:  5'- aGAUgGCGGCCGC--GGCCCgGCGGCg -3'
miRNA:   3'- cUUGgCGCUGGCGgaCCGGG-CGCUGg -5'
13190 3' -62.3 NC_003401.1 + 132367 0.68 0.512461
Target:  5'- -cGCCGCccccGGCCGCCccGCgCCGCGcGCCg -3'
miRNA:   3'- cuUGGCG----CUGGCGGacCG-GGCGC-UGG- -5'
13190 3' -62.3 NC_003401.1 + 132340 0.78 0.118955
Target:  5'- --uCCGCc-CCGCCggcccgGGCCCGCGGCCg -3'
miRNA:   3'- cuuGGCGcuGGCGGa-----CCGGGCGCUGG- -5'
13190 3' -62.3 NC_003401.1 + 132281 0.72 0.315099
Target:  5'- --cCCGCGcGCCcCCcgGGCCCGCGcGCCg -3'
miRNA:   3'- cuuGGCGC-UGGcGGa-CCGGGCGC-UGG- -5'
13190 3' -62.3 NC_003401.1 + 132242 0.81 0.073419
Target:  5'- cGGGCCGCGGCCGCCaucuUGcGCCCGgGGCg -3'
miRNA:   3'- -CUUGGCGCUGGCGG----AC-CGGGCgCUGg -5'
13190 3' -62.3 NC_003401.1 + 125810 0.66 0.608689
Target:  5'- --gUCGCGGCCGUCUccaCCGaCGACCu -3'
miRNA:   3'- cuuGGCGCUGGCGGAccgGGC-GCUGG- -5'
13190 3' -62.3 NC_003401.1 + 123518 0.66 0.599874
Target:  5'- gGGGCCGCG-CCGC--GGCCaaaccgccuauaugaGUGACCa -3'
miRNA:   3'- -CUUGGCGCuGGCGgaCCGGg--------------CGCUGG- -5'
13190 3' -62.3 NC_003401.1 + 123340 0.68 0.493903
Target:  5'- cGGugCGgGACUgGCCUcGGCCCGacaGACg -3'
miRNA:   3'- -CUugGCgCUGG-CGGA-CCGGGCg--CUGg -5'
13190 3' -62.3 NC_003401.1 + 122401 0.74 0.229282
Target:  5'- cGAACCGCGGaaagucuguuCCGCCgcgcaGCgCGCGGCCg -3'
miRNA:   3'- -CUUGGCGCU----------GGCGGac---CGgGCGCUGG- -5'
13190 3' -62.3 NC_003401.1 + 122093 0.71 0.336381
Target:  5'- cGGCCGCGccaGCCGCCgcaCCCGCGcCCc -3'
miRNA:   3'- cUUGGCGC---UGGCGGaccGGGCGCuGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.