miRNA display CGI


Results 1 - 20 of 37 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13204 5' -48.1 NC_003401.1 + 83690 0.66 0.999127
Target:  5'- cCAGAGAGCCauGCGccgUGCAAc-GGGGCa -3'
miRNA:   3'- -GUUUCUUGG--CGCa--GUGUUuuUCCCGa -5'
13204 5' -48.1 NC_003401.1 + 52613 0.66 0.999127
Target:  5'- ---cGAGCCGCGUC-CGAGcacGGCg -3'
miRNA:   3'- guuuCUUGGCGCAGuGUUUuucCCGa -5'
13204 5' -48.1 NC_003401.1 + 18951 0.66 0.998904
Target:  5'- aCAA--GACCGCGUCcgaucgcgcugACAGAcgcgugcagccagGAGGGCUc -3'
miRNA:   3'- -GUUucUUGGCGCAG-----------UGUUU-------------UUCCCGA- -5'
13204 5' -48.1 NC_003401.1 + 132639 0.66 0.998404
Target:  5'- gAAAGGuggucuCCGCGcCGCcggGAGGGGGGCc -3'
miRNA:   3'- gUUUCUu-----GGCGCaGUG---UUUUUCCCGa -5'
13204 5' -48.1 NC_003401.1 + 102858 0.66 0.998071
Target:  5'- gCGAGGAGaCgCGCGUUguugagGgAAGAGGGGCUc -3'
miRNA:   3'- -GUUUCUU-G-GCGCAG------UgUUUUUCCCGA- -5'
13204 5' -48.1 NC_003401.1 + 110707 0.67 0.997639
Target:  5'- gGAAGGAUUGUucuacgaGUCcccGCAGAGAGGGCc -3'
miRNA:   3'- gUUUCUUGGCG-------CAG---UGUUUUUCCCGa -5'
13204 5' -48.1 NC_003401.1 + 97378 0.67 0.997228
Target:  5'- ----aAACCGgGUCACGGu--GGGCa -3'
miRNA:   3'- guuucUUGGCgCAGUGUUuuuCCCGa -5'
13204 5' -48.1 NC_003401.1 + 28092 0.67 0.997228
Target:  5'- uCGGAGAauaguacgugGCCGCa-UACGGAGAGGGUUg -3'
miRNA:   3'- -GUUUCU----------UGGCGcaGUGUUUUUCCCGA- -5'
13204 5' -48.1 NC_003401.1 + 86024 0.67 0.997228
Target:  5'- gAAGGAgcagGCUGUGUCAagccAGGGGGCg -3'
miRNA:   3'- gUUUCU----UGGCGCAGUguu-UUUCCCGa -5'
13204 5' -48.1 NC_003401.1 + 12011 0.67 0.997179
Target:  5'- aCAGGGAcuucacuaaccagACCGUGUUucuGCAAccggucGAGGGGCUc -3'
miRNA:   3'- -GUUUCU-------------UGGCGCAG---UGUU------UUUCCCGA- -5'
13204 5' -48.1 NC_003401.1 + 20968 0.67 0.996704
Target:  5'- uGGAGGACuuuaCGCG-CGCGGAuugagucucGAGGGCUa -3'
miRNA:   3'- gUUUCUUG----GCGCaGUGUUU---------UUCCCGA- -5'
13204 5' -48.1 NC_003401.1 + 98996 0.67 0.9961
Target:  5'- --cAGGGCCagcgaGCGUCugAu-AGGGGCUa -3'
miRNA:   3'- guuUCUUGG-----CGCAGugUuuUUCCCGA- -5'
13204 5' -48.1 NC_003401.1 + 109208 0.67 0.995902
Target:  5'- gCAccGAGCCcguaCGUCACAAAAcacacguagcauucGGGGCa -3'
miRNA:   3'- -GUuuCUUGGc---GCAGUGUUUU--------------UCCCGa -5'
13204 5' -48.1 NC_003401.1 + 74025 0.68 0.99462
Target:  5'- cCGGAGAccgcCCGCGgCGC-AAAGGGGUUg -3'
miRNA:   3'- -GUUUCUu---GGCGCaGUGuUUUUCCCGA- -5'
13204 5' -48.1 NC_003401.1 + 123316 0.68 0.99462
Target:  5'- aCAGAcGAGCUGCGUCGgGuuaaucGGGGGGUa -3'
miRNA:   3'- -GUUU-CUUGGCGCAGUgUu-----UUUCCCGa -5'
13204 5' -48.1 NC_003401.1 + 132707 0.68 0.99462
Target:  5'- -cGGGAGCCGCGcgcCGCGGcuuguGGGGCc -3'
miRNA:   3'- guUUCUUGGCGCa--GUGUUuu---UCCCGa -5'
13204 5' -48.1 NC_003401.1 + 122048 0.68 0.993726
Target:  5'- --cAGGGCCGCaagugcgggcgGUUGCAGAAcaAGGGCa -3'
miRNA:   3'- guuUCUUGGCG-----------CAGUGUUUU--UCCCGa -5'
13204 5' -48.1 NC_003401.1 + 73311 0.68 0.993726
Target:  5'- aGGAGAGCgCGCGUgC-CAAAgugGAGGGUUg -3'
miRNA:   3'- gUUUCUUG-GCGCA-GuGUUU---UUCCCGA- -5'
13204 5' -48.1 NC_003401.1 + 71662 0.68 0.993726
Target:  5'- aUAAAGAGCCGCcugggacaGCAccGAGGGCc -3'
miRNA:   3'- -GUUUCUUGGCGcag-----UGUuuUUCCCGa -5'
13204 5' -48.1 NC_003401.1 + 19742 0.69 0.987323
Target:  5'- cCAccGAACCGCGgcgcgaaCACGAAGAuGGCUu -3'
miRNA:   3'- -GUuuCUUGGCGCa------GUGUUUUUcCCGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.