miRNA display CGI


Results 1 - 20 of 90 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13205 3' -48.6 NC_003401.1 + 78234 0.66 0.998605
Target:  5'- aGCGGugGCGGCg---CCGGcAGGCACa -3'
miRNA:   3'- aUGCCuuUGCCGagcaGGUU-UUUGUG- -5'
13205 3' -48.6 NC_003401.1 + 11263 0.66 0.998605
Target:  5'- aUGCGGAAGCauuccGGC-CGcCUcGAAACACu -3'
miRNA:   3'- -AUGCCUUUG-----CCGaGCaGGuUUUUGUG- -5'
13205 3' -48.6 NC_003401.1 + 17649 0.66 0.998308
Target:  5'- gGCGaGAAcgGCGGCgcgCGcUCgGAGGGCACc -3'
miRNA:   3'- aUGC-CUU--UGCCGa--GC-AGgUUUUUGUG- -5'
13205 3' -48.6 NC_003401.1 + 51605 0.66 0.998308
Target:  5'- cGCGGuuGCGcgcagccaucGCUCGUCuCGGGGACGu -3'
miRNA:   3'- aUGCCuuUGC----------CGAGCAG-GUUUUUGUg -5'
13205 3' -48.6 NC_003401.1 + 13031 0.66 0.998308
Target:  5'- gACGGAcugcguGGCGGUggaccaggCGUCCGucAGCAUc -3'
miRNA:   3'- aUGCCU------UUGCCGa-------GCAGGUuuUUGUG- -5'
13205 3' -48.6 NC_003401.1 + 31284 0.66 0.99821
Target:  5'- cAUGGAGACGcGUUCGUugucacaauagcccCCGGAGACcCg -3'
miRNA:   3'- aUGCCUUUGC-CGAGCA--------------GGUUUUUGuG- -5'
13205 3' -48.6 NC_003401.1 + 64718 0.66 0.99796
Target:  5'- aACGGAcagaGACauCUCGUCCucAAGGCGCg -3'
miRNA:   3'- aUGCCU----UUGccGAGCAGGu-UUUUGUG- -5'
13205 3' -48.6 NC_003401.1 + 108162 0.66 0.99796
Target:  5'- uUGCGGGuuaaGGagccaaUCGUUCAGGGACGCc -3'
miRNA:   3'- -AUGCCUuug-CCg-----AGCAGGUUUUUGUG- -5'
13205 3' -48.6 NC_003401.1 + 71461 0.66 0.99796
Target:  5'- cACGGGGACGGUcggugUGcCCAAccuGGCACc -3'
miRNA:   3'- aUGCCUUUGCCGa----GCaGGUUu--UUGUG- -5'
13205 3' -48.6 NC_003401.1 + 39586 0.66 0.99796
Target:  5'- gUAUGGGGACGGCaggCGgcCCAcAAAACAa -3'
miRNA:   3'- -AUGCCUUUGCCGa--GCa-GGU-UUUUGUg -5'
13205 3' -48.6 NC_003401.1 + 72411 0.66 0.99796
Target:  5'- -cUGG---UGGuCUCGUCCAuuGACACg -3'
miRNA:   3'- auGCCuuuGCC-GAGCAGGUuuUUGUG- -5'
13205 3' -48.6 NC_003401.1 + 55489 0.66 0.99796
Target:  5'- -uUGGAAAUGGUgcgcaaagUCGcCCGAAuACGCa -3'
miRNA:   3'- auGCCUUUGCCG--------AGCaGGUUUuUGUG- -5'
13205 3' -48.6 NC_003401.1 + 4323 0.66 0.997884
Target:  5'- aAUGGGuacauagacauUGGCUUGUCCAGaAGAUACa -3'
miRNA:   3'- aUGCCUuu---------GCCGAGCAGGUU-UUUGUG- -5'
13205 3' -48.6 NC_003401.1 + 46437 0.66 0.997724
Target:  5'- aGCGGAcgUGGCagCGUCCcccauuagcuccgugGAGAAUGCg -3'
miRNA:   3'- aUGCCUuuGCCGa-GCAGG---------------UUUUUGUG- -5'
13205 3' -48.6 NC_003401.1 + 22643 0.66 0.997554
Target:  5'- cACGGuuGACGGC--GUCCAuuAAUACc -3'
miRNA:   3'- aUGCCu-UUGCCGagCAGGUuuUUGUG- -5'
13205 3' -48.6 NC_003401.1 + 108952 0.66 0.997554
Target:  5'- aACGGggGCGGUUgUGUCUcGAuGCAg -3'
miRNA:   3'- aUGCCuuUGCCGA-GCAGGuUUuUGUg -5'
13205 3' -48.6 NC_003401.1 + 37817 0.66 0.997554
Target:  5'- gACGGggGCGGCgagaCGUUUucuGGAcCACu -3'
miRNA:   3'- aUGCCuuUGCCGa---GCAGGu--UUUuGUG- -5'
13205 3' -48.6 NC_003401.1 + 14615 0.66 0.997083
Target:  5'- -uUGGAAGCGGCUagGUaCCuc-GGCACa -3'
miRNA:   3'- auGCCUUUGCCGAg-CA-GGuuuUUGUG- -5'
13205 3' -48.6 NC_003401.1 + 123565 0.67 0.99636
Target:  5'- cACGu-AGUGGCUCGUCCcuuccaggggauccGAAAACACg -3'
miRNA:   3'- aUGCcuUUGCCGAGCAGG--------------UUUUUGUG- -5'
13205 3' -48.6 NC_003401.1 + 89867 0.67 0.995913
Target:  5'- gGCGGccugcguccAugGGCUUGagCCAGGGACGCc -3'
miRNA:   3'- aUGCCu--------UugCCGAGCa-GGUUUUUGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.