miRNA display CGI


Results 1 - 20 of 49 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13215 5' -61.4 NC_003401.1 + 1474 0.66 0.678966
Target:  5'- cCGCGGG-ACGUCuaCGGCCAGagaccaGCGAa -3'
miRNA:   3'- -GUGCCCuUGCGGccGCUGGUCg-----CGCU- -5'
13215 5' -61.4 NC_003401.1 + 19372 0.66 0.678966
Target:  5'- uCACGGGGcCGUCGGUGACgAuuguuuccgggGgGCGGg -3'
miRNA:   3'- -GUGCCCUuGCGGCCGCUGgU-----------CgCGCU- -5'
13215 5' -61.4 NC_003401.1 + 61116 0.66 0.669143
Target:  5'- uUACGGGAACuGCUGGUGcugggaaaaguACCAGCa--- -3'
miRNA:   3'- -GUGCCCUUG-CGGCCGC-----------UGGUCGcgcu -5'
13215 5' -61.4 NC_003401.1 + 121150 0.66 0.669143
Target:  5'- uCGCGGcGGGCGCgGGgGGCgCggggGGCGCGc -3'
miRNA:   3'- -GUGCC-CUUGCGgCCgCUG-G----UCGCGCu -5'
13215 5' -61.4 NC_003401.1 + 117925 0.66 0.668159
Target:  5'- gGCGGGGuCG-CGGCGAggucacgccgaacCgGGCGCGGg -3'
miRNA:   3'- gUGCCCUuGCgGCCGCU-------------GgUCGCGCU- -5'
13215 5' -61.4 NC_003401.1 + 118855 0.66 0.658306
Target:  5'- uCugGGGAaauuuccGCGCCaGCGGCCccuCGCGu -3'
miRNA:   3'- -GugCCCU-------UGCGGcCGCUGGuc-GCGCu -5'
13215 5' -61.4 NC_003401.1 + 20756 0.66 0.649422
Target:  5'- gCGCGGccccgcguuGGGgGuuGGCGGCCGGUGUGu -3'
miRNA:   3'- -GUGCC---------CUUgCggCCGCUGGUCGCGCu -5'
13215 5' -61.4 NC_003401.1 + 118551 0.66 0.649422
Target:  5'- aAUGGGucgaaccCGCCGGCG-UCAGCGUc- -3'
miRNA:   3'- gUGCCCuu-----GCGGCCGCuGGUCGCGcu -5'
13215 5' -61.4 NC_003401.1 + 14315 0.66 0.629649
Target:  5'- gGCGGGAGCaUCGGUG-CCucuGUGUGAg -3'
miRNA:   3'- gUGCCCUUGcGGCCGCuGGu--CGCGCU- -5'
13215 5' -61.4 NC_003401.1 + 117879 0.66 0.629649
Target:  5'- gAUGGGuACGCgCGGCGACCAuCGa-- -3'
miRNA:   3'- gUGCCCuUGCG-GCCGCUGGUcGCgcu -5'
13215 5' -61.4 NC_003401.1 + 78760 0.66 0.629649
Target:  5'- uGCaaGGAGCGCCGGCaaGGuuAGgGCGAa -3'
miRNA:   3'- gUGc-CCUUGCGGCCG--CUggUCgCGCU- -5'
13215 5' -61.4 NC_003401.1 + 68684 0.67 0.619761
Target:  5'- gCACGGG-ACGUuacaggUGGCGGCCc-CGCGGg -3'
miRNA:   3'- -GUGCCCuUGCG------GCCGCUGGucGCGCU- -5'
13215 5' -61.4 NC_003401.1 + 105264 0.67 0.60002
Target:  5'- -uCGGGAGCGUcaCGGCucuGCUAGCGCc- -3'
miRNA:   3'- guGCCCUUGCG--GCCGc--UGGUCGCGcu -5'
13215 5' -61.4 NC_003401.1 + 27704 0.67 0.590179
Target:  5'- gCGCGGGcc--CCGGUggaGGCCAGCGCa- -3'
miRNA:   3'- -GUGCCCuugcGGCCG---CUGGUCGCGcu -5'
13215 5' -61.4 NC_003401.1 + 118184 0.67 0.590179
Target:  5'- cCGCGGGcGACcCCGGCGGCggCAcCGCGGg -3'
miRNA:   3'- -GUGCCC-UUGcGGCCGCUG--GUcGCGCU- -5'
13215 5' -61.4 NC_003401.1 + 118103 0.67 0.590179
Target:  5'- -uCGGuGAccCGCCGGCGACCccGgGCGGc -3'
miRNA:   3'- guGCC-CUu-GCGGCCGCUGGu-CgCGCU- -5'
13215 5' -61.4 NC_003401.1 + 23482 0.67 0.590179
Target:  5'- -uCGGGGA-GCCGG-GugCAGgGCGGg -3'
miRNA:   3'- guGCCCUUgCGGCCgCugGUCgCGCU- -5'
13215 5' -61.4 NC_003401.1 + 125122 0.67 0.580366
Target:  5'- gACGGGuuGCGUgGGUaGugCuGCGCGAa -3'
miRNA:   3'- gUGCCCu-UGCGgCCG-CugGuCGCGCU- -5'
13215 5' -61.4 NC_003401.1 + 132567 0.67 0.579387
Target:  5'- cCGCGGGAcccccggccccGCGaaccgaaagcggcCCGGCG-CgCGGCGCGGg -3'
miRNA:   3'- -GUGCCCU-----------UGC-------------GGCCGCuG-GUCGCGCU- -5'
13215 5' -61.4 NC_003401.1 + 22593 0.67 0.570588
Target:  5'- gACGGGGuCGCuCGuGCGuugccACCAGCGCc- -3'
miRNA:   3'- gUGCCCUuGCG-GC-CGC-----UGGUCGCGcu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.