miRNA display CGI


Results 1 - 20 of 49 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13215 5' -61.4 NC_003401.1 + 132755 0.72 0.328488
Target:  5'- --aGGGGAgGCCGGCGgaggaccgccauGCCGgGCGCGGc -3'
miRNA:   3'- gugCCCUUgCGGCCGC------------UGGU-CGCGCU- -5'
13215 5' -61.4 NC_003401.1 + 132678 0.72 0.328488
Target:  5'- -cCGGG-GCGCCucGGCGGggcCCGGCGCGGg -3'
miRNA:   3'- guGCCCuUGCGG--CCGCU---GGUCGCGCU- -5'
13215 5' -61.4 NC_003401.1 + 132669 0.67 0.570588
Target:  5'- --gGGGGGCGUCGG-GGCgCGGCGCc- -3'
miRNA:   3'- gugCCCUUGCGGCCgCUG-GUCGCGcu -5'
13215 5' -61.4 NC_003401.1 + 132567 0.67 0.579387
Target:  5'- cCGCGGGAcccccggccccGCGaaccgaaagcggcCCGGCG-CgCGGCGCGGg -3'
miRNA:   3'- -GUGCCCU-----------UGC-------------GGCCGCuG-GUCGCGCU- -5'
13215 5' -61.4 NC_003401.1 + 132511 0.7 0.414475
Target:  5'- -cCGGGGGCGgCGGCcgcgggcccgGGCCGGCGgGGc -3'
miRNA:   3'- guGCCCUUGCgGCCG----------CUGGUCGCgCU- -5'
13215 5' -61.4 NC_003401.1 + 132460 0.77 0.16287
Target:  5'- --gGGGGAgGCCGGCGGcgcCCGGCGCGc -3'
miRNA:   3'- gugCCCUUgCGGCCGCU---GGUCGCGCu -5'
13215 5' -61.4 NC_003401.1 + 126539 0.69 0.485044
Target:  5'- gCACGGGGugcUGCCGGcCGACguGaugGCGAa -3'
miRNA:   3'- -GUGCCCUu--GCGGCC-GCUGguCg--CGCU- -5'
13215 5' -61.4 NC_003401.1 + 125122 0.67 0.580366
Target:  5'- gACGGGuuGCGUgGGUaGugCuGCGCGAa -3'
miRNA:   3'- gUGCCCu-UGCGgCCG-CugGuCGCGCU- -5'
13215 5' -61.4 NC_003401.1 + 122543 0.71 0.368994
Target:  5'- cCGCGGuu-CGCCGGCGACaagguaagggggccgCGGCGCGc -3'
miRNA:   3'- -GUGCCcuuGCGGCCGCUG---------------GUCGCGCu -5'
13215 5' -61.4 NC_003401.1 + 121926 0.78 0.143942
Target:  5'- aGCgGGGGGCGCgggugCGGCGGCUGGCGCGGc -3'
miRNA:   3'- gUG-CCCUUGCG-----GCCGCUGGUCGCGCU- -5'
13215 5' -61.4 NC_003401.1 + 121150 0.66 0.669143
Target:  5'- uCGCGGcGGGCGCgGGgGGCgCggggGGCGCGc -3'
miRNA:   3'- -GUGCC-CUUGCGgCCgCUG-G----UCGCGCu -5'
13215 5' -61.4 NC_003401.1 + 119855 0.7 0.4376
Target:  5'- gACGGGGGCagaccGCCGGUGGCCGGguucacgauggcuuUGUGAa -3'
miRNA:   3'- gUGCCCUUG-----CGGCCGCUGGUC--------------GCGCU- -5'
13215 5' -61.4 NC_003401.1 + 118855 0.66 0.658306
Target:  5'- uCugGGGAaauuuccGCGCCaGCGGCCccuCGCGu -3'
miRNA:   3'- -GugCCCU-------UGCGGcCGCUGGuc-GCGCu -5'
13215 5' -61.4 NC_003401.1 + 118551 0.66 0.649422
Target:  5'- aAUGGGucgaaccCGCCGGCG-UCAGCGUc- -3'
miRNA:   3'- gUGCCCuu-----GCGGCCGCuGGUCGCGcu -5'
13215 5' -61.4 NC_003401.1 + 118436 0.69 0.475899
Target:  5'- -cCGGGcaGAgGCCGGcCGGCCaaaGGUGCGAu -3'
miRNA:   3'- guGCCC--UUgCGGCC-GCUGG---UCGCGCU- -5'
13215 5' -61.4 NC_003401.1 + 118184 0.67 0.590179
Target:  5'- cCGCGGGcGACcCCGGCGGCggCAcCGCGGg -3'
miRNA:   3'- -GUGCCC-UUGcGGCCGCUG--GUcGCGCU- -5'
13215 5' -61.4 NC_003401.1 + 118117 0.71 0.397838
Target:  5'- aAUGGGGACGgUGGgGGCC-GCGCGc -3'
miRNA:   3'- gUGCCCUUGCgGCCgCUGGuCGCGCu -5'
13215 5' -61.4 NC_003401.1 + 118103 0.67 0.590179
Target:  5'- -uCGGuGAccCGCCGGCGACCccGgGCGGc -3'
miRNA:   3'- guGCC-CUu-GCGGCCGCUGGu-CgCGCU- -5'
13215 5' -61.4 NC_003401.1 + 117925 0.66 0.668159
Target:  5'- gGCGGGGuCG-CGGCGAggucacgccgaacCgGGCGCGGg -3'
miRNA:   3'- gUGCCCUuGCgGCCGCU-------------GgUCGCGCU- -5'
13215 5' -61.4 NC_003401.1 + 117879 0.66 0.629649
Target:  5'- gAUGGGuACGCgCGGCGACCAuCGa-- -3'
miRNA:   3'- gUGCCCuUGCG-GCCGCUGGUcGCgcu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.