Results 1 - 20 of 34 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
13248 | 3' | -47.4 | NC_003401.1 | + | 132239 | 0.66 | 0.999394 |
Target: 5'- ----cGCCGgGCCGCGgccgCCAUcuUGCGc -3' miRNA: 3'- uuuuuUGGUgUGGCGUa---GGUAu-ACGC- -5' |
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13248 | 3' | -47.4 | NC_003401.1 | + | 80981 | 0.66 | 0.999064 |
Target: 5'- ----cGCCAUgagACUGCGUUaCGUGUGCGa -3' miRNA: 3'- uuuuuUGGUG---UGGCGUAG-GUAUACGC- -5' |
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13248 | 3' | -47.4 | NC_003401.1 | + | 21023 | 0.66 | 0.998848 |
Target: 5'- cGGAGGACC---CCGCGUCCGUuuccGCGg -3' miRNA: 3'- -UUUUUUGGuguGGCGUAGGUAua--CGC- -5' |
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13248 | 3' | -47.4 | NC_003401.1 | + | 106889 | 0.66 | 0.999518 |
Target: 5'- cGAGAGGCUACGCCGgCGUU----UGCGg -3' miRNA: 3'- -UUUUUUGGUGUGGC-GUAGguauACGC- -5' |
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13248 | 3' | -47.4 | NC_003401.1 | + | 132552 | 0.66 | 0.999245 |
Target: 5'- --cAAGCCGCGgCGCGcggcUCCcgAUGCc -3' miRNA: 3'- uuuUUUGGUGUgGCGU----AGGuaUACGc -5' |
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13248 | 3' | -47.4 | NC_003401.1 | + | 91933 | 0.66 | 0.999245 |
Target: 5'- uAGAAACCACACCcaCGUCCA---GCu -3' miRNA: 3'- uUUUUUGGUGUGGc-GUAGGUauaCGc -5' |
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13248 | 3' | -47.4 | NC_003401.1 | + | 101605 | 0.66 | 0.999064 |
Target: 5'- uGAGGGCCACGCaCGCAg----AUGCGc -3' miRNA: 3'- uUUUUUGGUGUG-GCGUagguaUACGC- -5' |
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13248 | 3' | -47.4 | NC_003401.1 | + | 122829 | 0.66 | 0.999064 |
Target: 5'- ---cGugCACucuACCGCGUCCcugggGUGCGu -3' miRNA: 3'- uuuuUugGUG---UGGCGUAGGua---UACGC- -5' |
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13248 | 3' | -47.4 | NC_003401.1 | + | 52620 | 0.66 | 0.999245 |
Target: 5'- ----cACCAUacgaGCCGCGUCCGagcacgGCGg -3' miRNA: 3'- uuuuuUGGUG----UGGCGUAGGUaua---CGC- -5' |
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13248 | 3' | -47.4 | NC_003401.1 | + | 40810 | 0.66 | 0.999064 |
Target: 5'- -----cCCACACgGCAUCgGguUGUGCa -3' miRNA: 3'- uuuuuuGGUGUGgCGUAGgU--AUACGc -5' |
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13248 | 3' | -47.4 | NC_003401.1 | + | 74729 | 0.66 | 0.999394 |
Target: 5'- cAGAGAugUGCACCGCcgCCcuUcgGCa -3' miRNA: 3'- -UUUUUugGUGUGGCGuaGGu-AuaCGc -5' |
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13248 | 3' | -47.4 | NC_003401.1 | + | 26891 | 0.66 | 0.999518 |
Target: 5'- ----uGCCGCACCGCGguaaCAc-UGCGg -3' miRNA: 3'- uuuuuUGGUGUGGCGUag--GUauACGC- -5' |
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13248 | 3' | -47.4 | NC_003401.1 | + | 127489 | 0.67 | 0.997022 |
Target: 5'- aGGAGGGCCGCA-CGCAUCUgcggAUGCc -3' miRNA: 3'- -UUUUUUGGUGUgGCGUAGGua--UACGc -5' |
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13248 | 3' | -47.4 | NC_003401.1 | + | 38706 | 0.67 | 0.998286 |
Target: 5'- --cGAACUGCAUCGCGUCCAaacgGUa -3' miRNA: 3'- uuuUUUGGUGUGGCGUAGGUaua-CGc -5' |
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13248 | 3' | -47.4 | NC_003401.1 | + | 105677 | 0.67 | 0.998591 |
Target: 5'- -cAAAACCACGCCGUcuAUCguCGUGaGCGc -3' miRNA: 3'- uuUUUUGGUGUGGCG--UAG--GUAUaCGC- -5' |
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13248 | 3' | -47.4 | NC_003401.1 | + | 116707 | 0.67 | 0.998591 |
Target: 5'- ---cGACCAUGCUGCGccCCGUauucGUGCGg -3' miRNA: 3'- uuuuUUGGUGUGGCGUa-GGUA----UACGC- -5' |
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13248 | 3' | -47.4 | NC_003401.1 | + | 82802 | 0.67 | 0.997022 |
Target: 5'- --uGAAUCGuccaACgGCAUCCGUGUGCu -3' miRNA: 3'- uuuUUUGGUg---UGgCGUAGGUAUACGc -5' |
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13248 | 3' | -47.4 | NC_003401.1 | + | 23959 | 0.68 | 0.994824 |
Target: 5'- ---uGGCCGCGCCGguUUCAUAUauccgccaaccggcGCGg -3' miRNA: 3'- uuuuUUGGUGUGGCguAGGUAUA--------------CGC- -5' |
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13248 | 3' | -47.4 | NC_003401.1 | + | 118888 | 0.68 | 0.996458 |
Target: 5'- gAGGAAGCCGCGCCGcCAagCGgc-GCGg -3' miRNA: 3'- -UUUUUUGGUGUGGC-GUagGUauaCGC- -5' |
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13248 | 3' | -47.4 | NC_003401.1 | + | 85152 | 0.68 | 0.996458 |
Target: 5'- -----cCCACACgUGCAUCCcgGUGUa -3' miRNA: 3'- uuuuuuGGUGUG-GCGUAGGuaUACGc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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