Results 1 - 20 of 34 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
13248 | 3' | -47.4 | NC_003401.1 | + | 8715 | 0.68 | 0.99413 |
Target: 5'- ---cGGCCGCACCGCccucaccGUCCAgacgacgGCGc -3' miRNA: 3'- uuuuUUGGUGUGGCG-------UAGGUaua----CGC- -5' |
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13248 | 3' | -47.4 | NC_003401.1 | + | 17656 | 0.69 | 0.990962 |
Target: 5'- cGGGGGCCACgcgcGCCGCGUCCGcGUcGCc -3' miRNA: 3'- uUUUUUGGUG----UGGCGUAGGUaUA-CGc -5' |
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13248 | 3' | -47.4 | NC_003401.1 | + | 21023 | 0.66 | 0.998848 |
Target: 5'- cGGAGGACC---CCGCGUCCGUuuccGCGg -3' miRNA: 3'- -UUUUUUGGuguGGCGUAGGUAua--CGC- -5' |
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13248 | 3' | -47.4 | NC_003401.1 | + | 23959 | 0.68 | 0.994824 |
Target: 5'- ---uGGCCGCGCCGguUUCAUAUauccgccaaccggcGCGg -3' miRNA: 3'- uuuuUUGGUGUGGCguAGGUAUA--------------CGC- -5' |
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13248 | 3' | -47.4 | NC_003401.1 | + | 26891 | 0.66 | 0.999518 |
Target: 5'- ----uGCCGCACCGCGguaaCAc-UGCGg -3' miRNA: 3'- uuuuuUGGUGUGGCGUag--GUauACGC- -5' |
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13248 | 3' | -47.4 | NC_003401.1 | + | 27482 | 0.71 | 0.97225 |
Target: 5'- cAGAAGACCA-GCCGCAacUCCGUA-GCa -3' miRNA: 3'- -UUUUUUGGUgUGGCGU--AGGUAUaCGc -5' |
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13248 | 3' | -47.4 | NC_003401.1 | + | 30156 | 0.7 | 0.980259 |
Target: 5'- aGGAAGGCCugGCCGCcAUCCuuucGCa -3' miRNA: 3'- -UUUUUUGGugUGGCG-UAGGuauaCGc -5' |
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13248 | 3' | -47.4 | NC_003401.1 | + | 33331 | 0.77 | 0.794786 |
Target: 5'- ---cGACCACAUCGCcgUCGUGUGCc -3' miRNA: 3'- uuuuUUGGUGUGGCGuaGGUAUACGc -5' |
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13248 | 3' | -47.4 | NC_003401.1 | + | 38706 | 0.67 | 0.998286 |
Target: 5'- --cGAACUGCAUCGCGUCCAaacgGUa -3' miRNA: 3'- uuuUUUGGUGUGGCGUAGGUaua-CGc -5' |
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13248 | 3' | -47.4 | NC_003401.1 | + | 40810 | 0.66 | 0.999064 |
Target: 5'- -----cCCACACgGCAUCgGguUGUGCa -3' miRNA: 3'- uuuuuuGGUGUGgCGUAGgU--AUACGc -5' |
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13248 | 3' | -47.4 | NC_003401.1 | + | 47787 | 0.72 | 0.958245 |
Target: 5'- -uGAGACCAUG-CGCAUCCAU-UGCGc -3' miRNA: 3'- uuUUUUGGUGUgGCGUAGGUAuACGC- -5' |
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13248 | 3' | -47.4 | NC_003401.1 | + | 52620 | 0.66 | 0.999245 |
Target: 5'- ----cACCAUacgaGCCGCGUCCGagcacgGCGg -3' miRNA: 3'- uuuuuUGGUG----UGGCGUAGGUaua---CGC- -5' |
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13248 | 3' | -47.4 | NC_003401.1 | + | 61310 | 0.69 | 0.990962 |
Target: 5'- --cAGACCGgaGCCGUAUCCAUAgaGCa -3' miRNA: 3'- uuuUUUGGUg-UGGCGUAGGUAUa-CGc -5' |
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13248 | 3' | -47.4 | NC_003401.1 | + | 74729 | 0.66 | 0.999394 |
Target: 5'- cAGAGAugUGCACCGCcgCCcuUcgGCa -3' miRNA: 3'- -UUUUUugGUGUGGCGuaGGu-AuaCGc -5' |
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13248 | 3' | -47.4 | NC_003401.1 | + | 80981 | 0.66 | 0.999064 |
Target: 5'- ----cGCCAUgagACUGCGUUaCGUGUGCGa -3' miRNA: 3'- uuuuuUGGUG---UGGCGUAG-GUAUACGC- -5' |
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13248 | 3' | -47.4 | NC_003401.1 | + | 82802 | 0.67 | 0.997022 |
Target: 5'- --uGAAUCGuccaACgGCAUCCGUGUGCu -3' miRNA: 3'- uuuUUUGGUg---UGgCGUAGGUAUACGc -5' |
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13248 | 3' | -47.4 | NC_003401.1 | + | 85152 | 0.68 | 0.996458 |
Target: 5'- -----cCCACACgUGCAUCCcgGUGUa -3' miRNA: 3'- uuuuuuGGUGUG-GCGUAGGuaUACGc -5' |
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13248 | 3' | -47.4 | NC_003401.1 | + | 89653 | 0.71 | 0.975143 |
Target: 5'- --cGGACCGCGCCGCA-CCGUcaGCc -3' miRNA: 3'- uuuUUUGGUGUGGCGUaGGUAuaCGc -5' |
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13248 | 3' | -47.4 | NC_003401.1 | + | 89871 | 0.68 | 0.994221 |
Target: 5'- uAGAGGCgGC-CUGCGUCCAUggGCu -3' miRNA: 3'- uUUUUUGgUGuGGCGUAGGUAuaCGc -5' |
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13248 | 3' | -47.4 | NC_003401.1 | + | 91933 | 0.66 | 0.999245 |
Target: 5'- uAGAAACCACACCcaCGUCCA---GCu -3' miRNA: 3'- uUUUUUGGUGUGGc-GUAGGUauaCGc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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