Results 1 - 20 of 34 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
13248 | 3' | -47.4 | NC_003401.1 | + | 111330 | 1.07 | 0.019509 |
Target: 5'- cAAAAAACCACACCGCAUCCAUAUGCGu -3' miRNA: 3'- -UUUUUUGGUGUGGCGUAGGUAUACGC- -5' |
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13248 | 3' | -47.4 | NC_003401.1 | + | 132239 | 0.66 | 0.999394 |
Target: 5'- ----cGCCGgGCCGCGgccgCCAUcuUGCGc -3' miRNA: 3'- uuuuuUGGUgUGGCGUa---GGUAu-ACGC- -5' |
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13248 | 3' | -47.4 | NC_003401.1 | + | 132552 | 0.66 | 0.999245 |
Target: 5'- --cAAGCCGCGgCGCGcggcUCCcgAUGCc -3' miRNA: 3'- uuuUUUGGUGUgGCGU----AGGuaUACGc -5' |
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13248 | 3' | -47.4 | NC_003401.1 | + | 91933 | 0.66 | 0.999245 |
Target: 5'- uAGAAACCACACCcaCGUCCA---GCu -3' miRNA: 3'- uUUUUUGGUGUGGc-GUAGGUauaCGc -5' |
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13248 | 3' | -47.4 | NC_003401.1 | + | 101605 | 0.66 | 0.999064 |
Target: 5'- uGAGGGCCACGCaCGCAg----AUGCGc -3' miRNA: 3'- uUUUUUGGUGUG-GCGUagguaUACGC- -5' |
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13248 | 3' | -47.4 | NC_003401.1 | + | 122829 | 0.66 | 0.999064 |
Target: 5'- ---cGugCACucuACCGCGUCCcugggGUGCGu -3' miRNA: 3'- uuuuUugGUG---UGGCGUAGGua---UACGC- -5' |
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13248 | 3' | -47.4 | NC_003401.1 | + | 85152 | 0.68 | 0.996458 |
Target: 5'- -----cCCACACgUGCAUCCcgGUGUa -3' miRNA: 3'- uuuuuuGGUGUG-GCGUAGGuaUACGc -5' |
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13248 | 3' | -47.4 | NC_003401.1 | + | 118131 | 0.68 | 0.996273 |
Target: 5'- cAAAAGCCGCcccaugggcaccggACgGCA-CCAUGUGCa -3' miRNA: 3'- uUUUUUGGUG--------------UGgCGUaGGUAUACGc -5' |
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13248 | 3' | -47.4 | NC_003401.1 | + | 8715 | 0.68 | 0.99413 |
Target: 5'- ---cGGCCGCACCGCccucaccGUCCAgacgacgGCGc -3' miRNA: 3'- uuuuUUGGUGUGGCG-------UAGGUaua----CGC- -5' |
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13248 | 3' | -47.4 | NC_003401.1 | + | 61310 | 0.69 | 0.990962 |
Target: 5'- --cAGACCGgaGCCGUAUCCAUAgaGCa -3' miRNA: 3'- uuuUUUGGUg-UGGCGUAGGUAUa-CGc -5' |
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13248 | 3' | -47.4 | NC_003401.1 | + | 89653 | 0.71 | 0.975143 |
Target: 5'- --cGGACCGCGCCGCA-CCGUcaGCc -3' miRNA: 3'- uuuUUUGGUGUGGCGUaGGUAuaCGc -5' |
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13248 | 3' | -47.4 | NC_003401.1 | + | 23959 | 0.68 | 0.994824 |
Target: 5'- ---uGGCCGCGCCGguUUCAUAUauccgccaaccggcGCGg -3' miRNA: 3'- uuuuUUGGUGUGGCguAGGUAUA--------------CGC- -5' |
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13248 | 3' | -47.4 | NC_003401.1 | + | 89871 | 0.68 | 0.994221 |
Target: 5'- uAGAGGCgGC-CUGCGUCCAUggGCu -3' miRNA: 3'- uUUUUUGgUGuGGCGUAGGUAuaCGc -5' |
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13248 | 3' | -47.4 | NC_003401.1 | + | 17656 | 0.69 | 0.990962 |
Target: 5'- cGGGGGCCACgcgcGCCGCGUCCGcGUcGCc -3' miRNA: 3'- uUUUUUGGUG----UGGCGUAGGUaUA-CGc -5' |
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13248 | 3' | -47.4 | NC_003401.1 | + | 30156 | 0.7 | 0.980259 |
Target: 5'- aGGAAGGCCugGCCGCcAUCCuuucGCa -3' miRNA: 3'- -UUUUUUGGugUGGCG-UAGGuauaCGc -5' |
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13248 | 3' | -47.4 | NC_003401.1 | + | 27482 | 0.71 | 0.97225 |
Target: 5'- cAGAAGACCA-GCCGCAacUCCGUA-GCa -3' miRNA: 3'- -UUUUUUGGUgUGGCGU--AGGUAUaCGc -5' |
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13248 | 3' | -47.4 | NC_003401.1 | + | 122652 | 0.71 | 0.969121 |
Target: 5'- ---cAAUCACAUCGCAUCUGUGUGa- -3' miRNA: 3'- uuuuUUGGUGUGGCGUAGGUAUACgc -5' |
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13248 | 3' | -47.4 | NC_003401.1 | + | 47787 | 0.72 | 0.958245 |
Target: 5'- -uGAGACCAUG-CGCAUCCAU-UGCGc -3' miRNA: 3'- uuUUUUGGUGUgGCGUAGGUAuACGC- -5' |
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13248 | 3' | -47.4 | NC_003401.1 | + | 33331 | 0.77 | 0.794786 |
Target: 5'- ---cGACCACAUCGCcgUCGUGUGCc -3' miRNA: 3'- uuuuUUGGUGUGGCGuaGGUAUACGc -5' |
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13248 | 3' | -47.4 | NC_003401.1 | + | 26891 | 0.66 | 0.999518 |
Target: 5'- ----uGCCGCACCGCGguaaCAc-UGCGg -3' miRNA: 3'- uuuuuUGGUGUGGCGUag--GUauACGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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