miRNA display CGI


Results 1 - 20 of 34 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13248 3' -47.4 NC_003401.1 + 111330 1.07 0.019509
Target:  5'- cAAAAAACCACACCGCAUCCAUAUGCGu -3'
miRNA:   3'- -UUUUUUGGUGUGGCGUAGGUAUACGC- -5'
13248 3' -47.4 NC_003401.1 + 111536 0.77 0.774789
Target:  5'- -cAGAACCGgACCgGCGUCCGggUGUGCGg -3'
miRNA:   3'- uuUUUUGGUgUGG-CGUAGGU--AUACGC- -5'
13248 3' -47.4 NC_003401.1 + 33331 0.77 0.794786
Target:  5'- ---cGACCACAUCGCcgUCGUGUGCc -3'
miRNA:   3'- uuuuUUGGUGUGGCGuaGGUAUACGc -5'
13248 3' -47.4 NC_003401.1 + 47787 0.72 0.958245
Target:  5'- -uGAGACCAUG-CGCAUCCAU-UGCGc -3'
miRNA:   3'- uuUUUUGGUGUgGCGUAGGUAuACGC- -5'
13248 3' -47.4 NC_003401.1 + 122652 0.71 0.969121
Target:  5'- ---cAAUCACAUCGCAUCUGUGUGa- -3'
miRNA:   3'- uuuuUUGGUGUGGCGUAGGUAUACgc -5'
13248 3' -47.4 NC_003401.1 + 27482 0.71 0.97225
Target:  5'- cAGAAGACCA-GCCGCAacUCCGUA-GCa -3'
miRNA:   3'- -UUUUUUGGUgUGGCGU--AGGUAUaCGc -5'
13248 3' -47.4 NC_003401.1 + 89653 0.71 0.975143
Target:  5'- --cGGACCGCGCCGCA-CCGUcaGCc -3'
miRNA:   3'- uuuUUUGGUGUGGCGUaGGUAuaCGc -5'
13248 3' -47.4 NC_003401.1 + 30156 0.7 0.980259
Target:  5'- aGGAAGGCCugGCCGCcAUCCuuucGCa -3'
miRNA:   3'- -UUUUUUGGugUGGCG-UAGGuauaCGc -5'
13248 3' -47.4 NC_003401.1 + 17656 0.69 0.990962
Target:  5'- cGGGGGCCACgcgcGCCGCGUCCGcGUcGCc -3'
miRNA:   3'- uUUUUUGGUG----UGGCGUAGGUaUA-CGc -5'
13248 3' -47.4 NC_003401.1 + 61310 0.69 0.990962
Target:  5'- --cAGACCGgaGCCGUAUCCAUAgaGCa -3'
miRNA:   3'- uuuUUUGGUg-UGGCGUAGGUAUa-CGc -5'
13248 3' -47.4 NC_003401.1 + 8715 0.68 0.99413
Target:  5'- ---cGGCCGCACCGCccucaccGUCCAgacgacgGCGc -3'
miRNA:   3'- uuuuUUGGUGUGGCG-------UAGGUaua----CGC- -5'
13248 3' -47.4 NC_003401.1 + 89871 0.68 0.994221
Target:  5'- uAGAGGCgGC-CUGCGUCCAUggGCu -3'
miRNA:   3'- uUUUUUGgUGuGGCGUAGGUAuaCGc -5'
13248 3' -47.4 NC_003401.1 + 23959 0.68 0.994824
Target:  5'- ---uGGCCGCGCCGguUUCAUAUauccgccaaccggcGCGg -3'
miRNA:   3'- uuuuUUGGUGUGGCguAGGUAUA--------------CGC- -5'
13248 3' -47.4 NC_003401.1 + 123520 0.68 0.995067
Target:  5'- cAGGGGCCGCGCCGCggCCAaaccGCc -3'
miRNA:   3'- uUUUUUGGUGUGGCGuaGGUaua-CGc -5'
13248 3' -47.4 NC_003401.1 + 118131 0.68 0.996273
Target:  5'- cAAAAGCCGCcccaugggcaccggACgGCA-CCAUGUGCa -3'
miRNA:   3'- uUUUUUGGUG--------------UGgCGUaGGUAUACGc -5'
13248 3' -47.4 NC_003401.1 + 85152 0.68 0.996458
Target:  5'- -----cCCACACgUGCAUCCcgGUGUa -3'
miRNA:   3'- uuuuuuGGUGUG-GCGUAGGuaUACGc -5'
13248 3' -47.4 NC_003401.1 + 118888 0.68 0.996458
Target:  5'- gAGGAAGCCGCGCCGcCAagCGgc-GCGg -3'
miRNA:   3'- -UUUUUUGGUGUGGC-GUagGUauaCGC- -5'
13248 3' -47.4 NC_003401.1 + 82802 0.67 0.997022
Target:  5'- --uGAAUCGuccaACgGCAUCCGUGUGCu -3'
miRNA:   3'- uuuUUUGGUg---UGgCGUAGGUAUACGc -5'
13248 3' -47.4 NC_003401.1 + 127489 0.67 0.997022
Target:  5'- aGGAGGGCCGCA-CGCAUCUgcggAUGCc -3'
miRNA:   3'- -UUUUUUGGUGUgGCGUAGGua--UACGc -5'
13248 3' -47.4 NC_003401.1 + 38706 0.67 0.998286
Target:  5'- --cGAACUGCAUCGCGUCCAaacgGUa -3'
miRNA:   3'- uuuUUUGGUGUGGCGUAGGUaua-CGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.