miRNA display CGI


Results 1 - 20 of 47 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13252 3' -51.4 NC_003401.1 + 15021 0.66 0.988635
Target:  5'- aGAGGCGGGAuuUCCGugcgcCACGCgCGa -3'
miRNA:   3'- -CUCUGCCUU--AGGUuucuuGUGCGgGC- -5'
13252 3' -51.4 NC_003401.1 + 89027 0.66 0.988487
Target:  5'- --uGCGGucuacaaAAUCCAccGAGC-CGCCCGa -3'
miRNA:   3'- cucUGCC-------UUAGGUuuCUUGuGCGGGC- -5'
13252 3' -51.4 NC_003401.1 + 80872 0.66 0.987727
Target:  5'- cAGAUGGAagAUCCAgGAGAggggacgagccaaucGCAUGaCCCGg -3'
miRNA:   3'- cUCUGCCU--UAGGU-UUCU---------------UGUGC-GGGC- -5'
13252 3' -51.4 NC_003401.1 + 123082 0.66 0.987091
Target:  5'- gGAGugGGAAagCugucGGGAAC-CGCCUGc -3'
miRNA:   3'- -CUCugCCUUagGu---UUCUUGuGCGGGC- -5'
13252 3' -51.4 NC_003401.1 + 49257 0.66 0.987091
Target:  5'- --cACGGAAUCUgucgccauAAGGGACGUGCCUGg -3'
miRNA:   3'- cucUGCCUUAGG--------UUUCUUGUGCGGGC- -5'
13252 3' -51.4 NC_003401.1 + 117926 0.66 0.987091
Target:  5'- -cGGCGGggUCgCGgcGAGGuCACGCCg- -3'
miRNA:   3'- cuCUGCCuuAG-GU--UUCUuGUGCGGgc -5'
13252 3' -51.4 NC_003401.1 + 70727 0.66 0.987091
Target:  5'- cGGACGGucuUUUAGAacACGCGCCCu -3'
miRNA:   3'- cUCUGCCuu-AGGUUUcuUGUGCGGGc -5'
13252 3' -51.4 NC_003401.1 + 21405 0.66 0.98539
Target:  5'- uGGGGCGGAGUacaGGGGGGCcgACGCCa- -3'
miRNA:   3'- -CUCUGCCUUAgg-UUUCUUG--UGCGGgc -5'
13252 3' -51.4 NC_003401.1 + 123368 0.66 0.984848
Target:  5'- cGGGCGGcacgccGGUCCAGuugaccgacggugcGGGACugGCCuCGg -3'
miRNA:   3'- cUCUGCC------UUAGGUU--------------UCUUGugCGG-GC- -5'
13252 3' -51.4 NC_003401.1 + 87535 0.66 0.983523
Target:  5'- cGAGGCcguGGAGUCUAAGcGAUAC-CCCGg -3'
miRNA:   3'- -CUCUG---CCUUAGGUUUcUUGUGcGGGC- -5'
13252 3' -51.4 NC_003401.1 + 20911 0.66 0.983523
Target:  5'- aGAGAUGGAGauggCCGuuuGAGCACaccCCCGu -3'
miRNA:   3'- -CUCUGCCUUa---GGUuu-CUUGUGc--GGGC- -5'
13252 3' -51.4 NC_003401.1 + 113577 0.66 0.983523
Target:  5'- ---cCGGAAcCCAAAGAcACGUGCCCGu -3'
miRNA:   3'- cucuGCCUUaGGUUUCU-UGUGCGGGC- -5'
13252 3' -51.4 NC_003401.1 + 23574 0.66 0.983523
Target:  5'- aGAGcACGGGuUUCGGuAGuGACGCGCCUGg -3'
miRNA:   3'- -CUC-UGCCUuAGGUU-UC-UUGUGCGGGC- -5'
13252 3' -51.4 NC_003401.1 + 62190 0.66 0.981482
Target:  5'- --cACGGAAUCCAcuGAACGuuCGaCCCa -3'
miRNA:   3'- cucUGCCUUAGGUuuCUUGU--GC-GGGc -5'
13252 3' -51.4 NC_003401.1 + 121156 0.66 0.981482
Target:  5'- cGGGcGCGGGGggCgCGGGGGGCGCGCCgGu -3'
miRNA:   3'- -CUC-UGCCUUa-G-GUUUCUUGUGCGGgC- -5'
13252 3' -51.4 NC_003401.1 + 43748 0.67 0.979256
Target:  5'- --cGCGGAAUCCcuAGAGCACagguucCCCa -3'
miRNA:   3'- cucUGCCUUAGGuuUCUUGUGc-----GGGc -5'
13252 3' -51.4 NC_003401.1 + 122140 0.67 0.979256
Target:  5'- -cGGCGGca-CUAGAGAACAgGCCgGg -3'
miRNA:   3'- cuCUGCCuuaGGUUUCUUGUgCGGgC- -5'
13252 3' -51.4 NC_003401.1 + 82905 0.67 0.979023
Target:  5'- cGGAuaUGGAGUCgAAAGGuuguccuuaguugACACGUCCGa -3'
miRNA:   3'- cUCU--GCCUUAGgUUUCU-------------UGUGCGGGC- -5'
13252 3' -51.4 NC_003401.1 + 15316 0.67 0.978312
Target:  5'- -cGACGGAAacUCCAAaacgucgguguccgGGAuggggucGCACGuCCCGa -3'
miRNA:   3'- cuCUGCCUU--AGGUU--------------UCU-------UGUGC-GGGC- -5'
13252 3' -51.4 NC_003401.1 + 85644 0.67 0.974219
Target:  5'- cGGACGGuc-CCgAAAGGGCgugaagcauuccGCGCCCGa -3'
miRNA:   3'- cUCUGCCuuaGG-UUUCUUG------------UGCGGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.