miRNA display CGI


Results 1 - 20 of 32 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13255 5' -61.4 NC_003401.1 + 123531 0.66 0.660838
Target:  5'- aACACGGGGuccaggggccGCGC-CGCggccaaACCGCCUa -3'
miRNA:   3'- -UGUGCCCU----------UGCGcGCGac----UGGCGGGa -5'
13255 5' -61.4 NC_003401.1 + 16292 0.66 0.650903
Target:  5'- -gACGGaagaccugcGAACGCGUcucggucgcgaGgUGACCGCCCg -3'
miRNA:   3'- ugUGCC---------CUUGCGCG-----------CgACUGGCGGGa -5'
13255 5' -61.4 NC_003401.1 + 43163 0.66 0.640953
Target:  5'- uCACGGGAACGCcggcgaccaGCGC-GACgGaCCUg -3'
miRNA:   3'- uGUGCCCUUGCG---------CGCGaCUGgCgGGA- -5'
13255 5' -61.4 NC_003401.1 + 23576 0.66 0.640953
Target:  5'- aGCACGGGuuucgguaguGACGCGC-CUGgacgGCUGCCa- -3'
miRNA:   3'- -UGUGCCC----------UUGCGCGcGAC----UGGCGGga -5'
13255 5' -61.4 NC_003401.1 + 71972 0.66 0.630996
Target:  5'- cGCGUGGGGGCGCGCGUUccaGGgUGUCCc -3'
miRNA:   3'- -UGUGCCCUUGCGCGCGA---CUgGCGGGa -5'
13255 5' -61.4 NC_003401.1 + 71459 0.66 0.630996
Target:  5'- uGCACGGGGACG-GUcg-GugUGCCCa -3'
miRNA:   3'- -UGUGCCCUUGCgCGcgaCugGCGGGa -5'
13255 5' -61.4 NC_003401.1 + 118840 0.66 0.630996
Target:  5'- -uGCGGaGAuccccCGUGCGCaucGCCGCCCUc -3'
miRNA:   3'- ugUGCC-CUu----GCGCGCGac-UGGCGGGA- -5'
13255 5' -61.4 NC_003401.1 + 16253 0.66 0.625022
Target:  5'- aGCgACGGGucaucgcacgccgccAGgGUGCGCcgGAUCGCCCUu -3'
miRNA:   3'- -UG-UGCCC---------------UUgCGCGCGa-CUGGCGGGA- -5'
13255 5' -61.4 NC_003401.1 + 101130 0.67 0.60116
Target:  5'- gACAC-GGAugGCGCGUUucuagaacaGAUCGCUCg -3'
miRNA:   3'- -UGUGcCCUugCGCGCGA---------CUGGCGGGa -5'
13255 5' -61.4 NC_003401.1 + 70558 0.67 0.591249
Target:  5'- aACAcCGGaGAGgGCGCGUguucuaaaaGACCGUCCg -3'
miRNA:   3'- -UGU-GCC-CUUgCGCGCGa--------CUGGCGGGa -5'
13255 5' -61.4 NC_003401.1 + 121933 0.67 0.571518
Target:  5'- gGCGCGGGuGCgGCG-GCUGGCgCGgCCg -3'
miRNA:   3'- -UGUGCCCuUG-CGCgCGACUG-GCgGGa -5'
13255 5' -61.4 NC_003401.1 + 12592 0.68 0.546116
Target:  5'- cCugGGGAAgguuuuccagagcguCaGCGCGCaGACCGCCg- -3'
miRNA:   3'- uGugCCCUU---------------G-CGCGCGaCUGGCGGga -5'
13255 5' -61.4 NC_003401.1 + 112996 0.68 0.532587
Target:  5'- -gACGGGAACGCaCGUUaACUGCUCUc -3'
miRNA:   3'- ugUGCCCUUGCGcGCGAcUGGCGGGA- -5'
13255 5' -61.4 NC_003401.1 + 17496 0.68 0.522997
Target:  5'- gACGCGGacGCgGCGCGCgUGGCC-CCCg -3'
miRNA:   3'- -UGUGCCcuUG-CGCGCG-ACUGGcGGGa -5'
13255 5' -61.4 NC_003401.1 + 108859 0.68 0.520133
Target:  5'- gACGCGGGAcuucuggccucgcuGCGagaacugGCGCcGACCGUCCc -3'
miRNA:   3'- -UGUGCCCU--------------UGCg------CGCGaCUGGCGGGa -5'
13255 5' -61.4 NC_003401.1 + 27088 0.68 0.504023
Target:  5'- aACACGGGAugGUGCaaGUacuCCGCCUg -3'
miRNA:   3'- -UGUGCCCUugCGCG--CGacuGGCGGGa -5'
13255 5' -61.4 NC_003401.1 + 16348 0.68 0.504023
Target:  5'- uGCAUGGGAggAgGC-CGCUGGCCaCCCc -3'
miRNA:   3'- -UGUGCCCU--UgCGcGCGACUGGcGGGa -5'
13255 5' -61.4 NC_003401.1 + 8870 0.69 0.485353
Target:  5'- uCGCGGG-GCGCgGCGUgGACCGCaaCCUg -3'
miRNA:   3'- uGUGCCCuUGCG-CGCGaCUGGCG--GGA- -5'
13255 5' -61.4 NC_003401.1 + 132712 0.69 0.483504
Target:  5'- gGCAuCGGGAGcCGCGCGCcgcggcuuguggGGCCccggGCCCg -3'
miRNA:   3'- -UGU-GCCCUU-GCGCGCGa-----------CUGG----CGGGa -5'
13255 5' -61.4 NC_003401.1 + 123657 0.69 0.476143
Target:  5'- gACACGGGGgacACGCGCGCUcACauaGaCCUa -3'
miRNA:   3'- -UGUGCCCU---UGCGCGCGAcUGg--CgGGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.