miRNA display CGI


Results 1 - 20 of 105 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13260 3' -54.2 NC_003401.1 + 56875 0.66 0.949979
Target:  5'- uGGAUUCCgUAAACgaguaCgGAGuuCCCACUGc -3'
miRNA:   3'- -CCUAAGGgGUUUG-----GgCUCu-GGGUGAC- -5'
13260 3' -54.2 NC_003401.1 + 26457 0.66 0.949979
Target:  5'- nGGGcUCCCCGuucCCCGAGGguCCCGg-- -3'
miRNA:   3'- -CCUaAGGGGUuu-GGGCUCU--GGGUgac -5'
13260 3' -54.2 NC_003401.1 + 92154 0.66 0.945634
Target:  5'- cGAUUCCCCGu-CCCG--GCCUGCUc -3'
miRNA:   3'- cCUAAGGGGUuuGGGCucUGGGUGAc -5'
13260 3' -54.2 NC_003401.1 + 107795 0.66 0.945186
Target:  5'- cGAUgggCCCCGcGCCCGguggcgcGGACCCGg-- -3'
miRNA:   3'- cCUAa--GGGGUuUGGGC-------UCUGGGUgac -5'
13260 3' -54.2 NC_003401.1 + 132485 0.66 0.941048
Target:  5'- gGGAgcgCCCCGguccggccgAGCCCGGcGGCgCCGCg- -3'
miRNA:   3'- -CCUaa-GGGGU---------UUGGGCU-CUG-GGUGac -5'
13260 3' -54.2 NC_003401.1 + 25533 0.66 0.936219
Target:  5'- cGGGcUCCCCGuucCCCGAGGguCCCGg-- -3'
miRNA:   3'- -CCUaAGGGGUuu-GGGCUCU--GGGUgac -5'
13260 3' -54.2 NC_003401.1 + 25583 0.66 0.936219
Target:  5'- cGGGcUCCCCGuucCCCGAGGguCCCGg-- -3'
miRNA:   3'- -CCUaAGGGGUuu-GGGCUCU--GGGUgac -5'
13260 3' -54.2 NC_003401.1 + 26432 0.66 0.936219
Target:  5'- cGGGcUCCCCGuucCCCGAGGguCCCGg-- -3'
miRNA:   3'- -CCUaAGGGGUuu-GGGCUCU--GGGUgac -5'
13260 3' -54.2 NC_003401.1 + 26382 0.66 0.936219
Target:  5'- cGGGcUCCCCGuucCCCGAGGguCCCGg-- -3'
miRNA:   3'- -CCUaAGGGGUuu-GGGCUCU--GGGUgac -5'
13260 3' -54.2 NC_003401.1 + 25633 0.66 0.936219
Target:  5'- cGGGcUCCCCGuucCCCGAGGguCCCGg-- -3'
miRNA:   3'- -CCUaAGGGGUuu-GGGCUCU--GGGUgac -5'
13260 3' -54.2 NC_003401.1 + 26332 0.66 0.936219
Target:  5'- cGGGcUCCCCGuucCCCGAGGguCCCGg-- -3'
miRNA:   3'- -CCUaAGGGGUuu-GGGCUCU--GGGUgac -5'
13260 3' -54.2 NC_003401.1 + 26282 0.66 0.936219
Target:  5'- cGGGcUCCCCGuucCCCGAGGguCCCGg-- -3'
miRNA:   3'- -CCUaAGGGGUuu-GGGCUCU--GGGUgac -5'
13260 3' -54.2 NC_003401.1 + 25783 0.66 0.936219
Target:  5'- cGGGcUCCCCGuucCCCGAGGguCCCGg-- -3'
miRNA:   3'- -CCUaAGGGGUuu-GGGCUCU--GGGUgac -5'
13260 3' -54.2 NC_003401.1 + 25833 0.66 0.936219
Target:  5'- cGGGcUCCCCGuucCCCGAGGguCCCGg-- -3'
miRNA:   3'- -CCUaAGGGGUuu-GGGCUCU--GGGUgac -5'
13260 3' -54.2 NC_003401.1 + 25883 0.66 0.936219
Target:  5'- cGGGcUCCCCGuucCCCGAGGguCCCGg-- -3'
miRNA:   3'- -CCUaAGGGGUuu-GGGCUCU--GGGUgac -5'
13260 3' -54.2 NC_003401.1 + 25982 0.66 0.936219
Target:  5'- cGGGcUCCCCGuucCCCGAGGguCCCGg-- -3'
miRNA:   3'- -CCUaAGGGGUuu-GGGCUCU--GGGUgac -5'
13260 3' -54.2 NC_003401.1 + 26032 0.66 0.936219
Target:  5'- cGGGcUCCCCGuucCCCGAGGguCCCGg-- -3'
miRNA:   3'- -CCUaAGGGGUuu-GGGCUCU--GGGUgac -5'
13260 3' -54.2 NC_003401.1 + 26082 0.66 0.936219
Target:  5'- cGGGcUCCCCGuucCCCGAGGguCCCGg-- -3'
miRNA:   3'- -CCUaAGGGGUuu-GGGCUCU--GGGUgac -5'
13260 3' -54.2 NC_003401.1 + 26132 0.66 0.936219
Target:  5'- cGGGcUCCCCGuucCCCGAGGguCCCGg-- -3'
miRNA:   3'- -CCUaAGGGGUuu-GGGCUCU--GGGUgac -5'
13260 3' -54.2 NC_003401.1 + 26182 0.66 0.936219
Target:  5'- cGGGcUCCCCGuucCCCGAGGguCCCGg-- -3'
miRNA:   3'- -CCUaAGGGGUuu-GGGCUCU--GGGUgac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.