miRNA display CGI


Results 1 - 20 of 28 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13265 3' -57.1 NC_003401.1 + 121194 0.66 0.855992
Target:  5'- gACCCAg-GAUCGaccccCCUCGGccgGGCCc -3'
miRNA:   3'- -UGGGUaaCUGGCgua--GGAGCCa--CCGG- -5'
13265 3' -57.1 NC_003401.1 + 118609 0.66 0.840086
Target:  5'- gACCCcgcGAUCGCAcCUUUGGccGGCCg -3'
miRNA:   3'- -UGGGuaaCUGGCGUaGGAGCCa-CCGG- -5'
13265 3' -57.1 NC_003401.1 + 106047 0.66 0.823426
Target:  5'- cGCCCGgucgucGAcuCCGCcgCUUCuGGUGGUCa -3'
miRNA:   3'- -UGGGUaa----CU--GGCGuaGGAG-CCACCGG- -5'
13265 3' -57.1 NC_003401.1 + 81368 0.66 0.823426
Target:  5'- -aCCAUgu-CC-CGUCCUCGcUGGCCa -3'
miRNA:   3'- ugGGUAacuGGcGUAGGAGCcACCGG- -5'
13265 3' -57.1 NC_003401.1 + 7973 0.66 0.823426
Target:  5'- aAUCCGgcGAUgGCAUCCUCcccuccgaGUGGCUa -3'
miRNA:   3'- -UGGGUaaCUGgCGUAGGAGc-------CACCGG- -5'
13265 3' -57.1 NC_003401.1 + 11913 0.67 0.797156
Target:  5'- uGCCUucuugGugCGUcuuGUCCUCGGUGcCCg -3'
miRNA:   3'- -UGGGuaa--CugGCG---UAGGAGCCACcGG- -5'
13265 3' -57.1 NC_003401.1 + 120541 0.67 0.78809
Target:  5'- -aCCAUUGACCcCGUCCUguaccaGGaccgGGCCc -3'
miRNA:   3'- ugGGUAACUGGcGUAGGAg-----CCa---CCGG- -5'
13265 3' -57.1 NC_003401.1 + 76974 0.68 0.763887
Target:  5'- aGCCCucguuuucgucagUGAUCGCGUacaCCa-GGUGGCCg -3'
miRNA:   3'- -UGGGua-----------ACUGGCGUA---GGagCCACCGG- -5'
13265 3' -57.1 NC_003401.1 + 64304 0.68 0.740841
Target:  5'- cCCCGggaaucGGCaGCAUCCUgGGagUGGCCg -3'
miRNA:   3'- uGGGUaa----CUGgCGUAGGAgCC--ACCGG- -5'
13265 3' -57.1 NC_003401.1 + 16316 0.68 0.73107
Target:  5'- aACCCGUaaACCGCGUuacaugucaCCUUGaUGGCCa -3'
miRNA:   3'- -UGGGUAacUGGCGUA---------GGAGCcACCGG- -5'
13265 3' -57.1 NC_003401.1 + 97514 0.68 0.73107
Target:  5'- uGCCUGUUGACguuucUGCG-CUUUGGUGGUCu -3'
miRNA:   3'- -UGGGUAACUG-----GCGUaGGAGCCACCGG- -5'
13265 3' -57.1 NC_003401.1 + 19801 0.69 0.711282
Target:  5'- cGCCCGgcagcuccagGGCgCGCGa--UCGGUGGCCg -3'
miRNA:   3'- -UGGGUaa--------CUG-GCGUaggAGCCACCGG- -5'
13265 3' -57.1 NC_003401.1 + 69827 0.69 0.701283
Target:  5'- cGCCCuucagucuuUUGuCUGCcacGUCCUCGcGUGGCUg -3'
miRNA:   3'- -UGGGu--------AACuGGCG---UAGGAGC-CACCGG- -5'
13265 3' -57.1 NC_003401.1 + 119897 0.69 0.691226
Target:  5'- aACCCucgcGGCCGCcgCCgagUCGGUuGCCa -3'
miRNA:   3'- -UGGGuaa-CUGGCGuaGG---AGCCAcCGG- -5'
13265 3' -57.1 NC_003401.1 + 105842 0.69 0.659775
Target:  5'- aGCCCGUgggcUGuCCGUacucguacggcggGUgCUCGGUGGUCg -3'
miRNA:   3'- -UGGGUA----ACuGGCG-------------UAgGAGCCACCGG- -5'
13265 3' -57.1 NC_003401.1 + 118019 0.7 0.650593
Target:  5'- uACCCAUcGGCCGC-UCUUUGGcgccggGGUCg -3'
miRNA:   3'- -UGGGUAaCUGGCGuAGGAGCCa-----CCGG- -5'
13265 3' -57.1 NC_003401.1 + 121825 0.7 0.650593
Target:  5'- gACCCuugggaUGACC-CGUgCCuggauUCGGUGGCCg -3'
miRNA:   3'- -UGGGua----ACUGGcGUA-GG-----AGCCACCGG- -5'
13265 3' -57.1 NC_003401.1 + 64099 0.7 0.630154
Target:  5'- cGCgCCAcUGACCGCGU--UUGGUGGUCc -3'
miRNA:   3'- -UG-GGUaACUGGCGUAggAGCCACCGG- -5'
13265 3' -57.1 NC_003401.1 + 126007 0.7 0.609722
Target:  5'- gACCCAcgGuGCCGCA-Ca-CGGUGGCCc -3'
miRNA:   3'- -UGGGUaaC-UGGCGUaGgaGCCACCGG- -5'
13265 3' -57.1 NC_003401.1 + 104685 0.71 0.579216
Target:  5'- cGCCCGgcGAUgGa---CUCGGUGGCCa -3'
miRNA:   3'- -UGGGUaaCUGgCguagGAGCCACCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.