miRNA display CGI


Results 1 - 20 of 61 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13268 5' -55.7 NC_003401.1 + 28225 0.66 0.904201
Target:  5'- cGCCGUUGCCGgcAUCGAgggUGgCGCa-- -3'
miRNA:   3'- -CGGCGACGGCuuUGGUU---GCgGCGaac -5'
13268 5' -55.7 NC_003401.1 + 30580 0.66 0.897753
Target:  5'- uCCGCU-CUGu-GCCAACGUCGCg-- -3'
miRNA:   3'- cGGCGAcGGCuuUGGUUGCGGCGaac -5'
13268 5' -55.7 NC_003401.1 + 23680 0.66 0.897753
Target:  5'- cGCCGCgauuuggcaaaaUGgCGGAccGgCAGCGCCGgUUGg -3'
miRNA:   3'- -CGGCG------------ACgGCUU--UgGUUGCGGCgAAC- -5'
13268 5' -55.7 NC_003401.1 + 23862 0.66 0.897753
Target:  5'- cGCCGC-GUCc-AACCGGCGCUGCc-- -3'
miRNA:   3'- -CGGCGaCGGcuUUGGUUGCGGCGaac -5'
13268 5' -55.7 NC_003401.1 + 115429 0.66 0.897753
Target:  5'- cCCGgaGCCaccccGGAGCCGA-GCCGCUc- -3'
miRNA:   3'- cGGCgaCGG-----CUUUGGUUgCGGCGAac -5'
13268 5' -55.7 NC_003401.1 + 132490 0.66 0.897753
Target:  5'- cGCCcCgguccgGCCGAGcCCGgcgGCGCCGCg-- -3'
miRNA:   3'- -CGGcGa-----CGGCUUuGGU---UGCGGCGaac -5'
13268 5' -55.7 NC_003401.1 + 72134 0.66 0.891068
Target:  5'- -aCGCUGCaCGGGACCucaAGCGuCCGUg-- -3'
miRNA:   3'- cgGCGACG-GCUUUGG---UUGC-GGCGaac -5'
13268 5' -55.7 NC_003401.1 + 125670 0.66 0.891068
Target:  5'- gGCCGCgacGUCGAAcCCGACGuuGgUg- -3'
miRNA:   3'- -CGGCGa--CGGCUUuGGUUGCggCgAac -5'
13268 5' -55.7 NC_003401.1 + 125906 0.66 0.890387
Target:  5'- -aCGCcGUCGAGGCCgccagcaGugGCCGcCUUGg -3'
miRNA:   3'- cgGCGaCGGCUUUGG-------UugCGGC-GAAC- -5'
13268 5' -55.7 NC_003401.1 + 132526 0.66 0.88415
Target:  5'- cGCgGCgcggggcgGCCGggGgCGGCGgCCGCg-- -3'
miRNA:   3'- -CGgCGa-------CGGCuuUgGUUGC-GGCGaac -5'
13268 5' -55.7 NC_003401.1 + 111327 0.66 0.88415
Target:  5'- -aCGUUGCCGAAAa-GACGCCGa--- -3'
miRNA:   3'- cgGCGACGGCUUUggUUGCGGCgaac -5'
13268 5' -55.7 NC_003401.1 + 122726 0.66 0.88415
Target:  5'- gGCCGCgGCUc--ACCGGCGCgGCg-- -3'
miRNA:   3'- -CGGCGaCGGcuuUGGUUGCGgCGaac -5'
13268 5' -55.7 NC_003401.1 + 16826 0.66 0.88415
Target:  5'- gGCCGCuUGCacaacAGCC-GCGCCGCa-- -3'
miRNA:   3'- -CGGCG-ACGgcu--UUGGuUGCGGCGaac -5'
13268 5' -55.7 NC_003401.1 + 53716 0.66 0.88415
Target:  5'- aGCCGCUGCUGcucAUCGAUGUCGa--- -3'
miRNA:   3'- -CGGCGACGGCuu-UGGUUGCGGCgaac -5'
13268 5' -55.7 NC_003401.1 + 11705 0.66 0.883446
Target:  5'- cGCCG-UGCCGAucgcgauuaucacGACCcACGcCCGCa-- -3'
miRNA:   3'- -CGGCgACGGCU-------------UUGGuUGC-GGCGaac -5'
13268 5' -55.7 NC_003401.1 + 125194 0.66 0.879889
Target:  5'- cGCUGCUGCUGGuugagaugguacuCCAugGCGUCGCg-- -3'
miRNA:   3'- -CGGCGACGGCUuu-----------GGU--UGCGGCGaac -5'
13268 5' -55.7 NC_003401.1 + 88251 0.66 0.877003
Target:  5'- gGUCGCUuuggcGCCGGcaacaGGCgAACGCCGUUg- -3'
miRNA:   3'- -CGGCGA-----CGGCU-----UUGgUUGCGGCGAac -5'
13268 5' -55.7 NC_003401.1 + 123516 0.66 0.877003
Target:  5'- gGCCGC-GCCGcgGCCAAa-CCGCc-- -3'
miRNA:   3'- -CGGCGaCGGCuuUGGUUgcGGCGaac -5'
13268 5' -55.7 NC_003401.1 + 100628 0.66 0.877003
Target:  5'- cGCCGCgaucGCCGGAugUGACGUCa---- -3'
miRNA:   3'- -CGGCGa---CGGCUUugGUUGCGGcgaac -5'
13268 5' -55.7 NC_003401.1 + 90757 0.66 0.877003
Target:  5'- aGCCGCugugcUGCUGAcGCUcACGCaCGuCUUGg -3'
miRNA:   3'- -CGGCG-----ACGGCUuUGGuUGCG-GC-GAAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.