miRNA display CGI


Results 1 - 20 of 73 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13277 5' -57.4 NC_003409.1 + 133843 0.66 0.817976
Target:  5'- uGGCGGUg-CAGGCuucaACCGGGGacaauuauaacgUGGCCa -3'
miRNA:   3'- -CCGUCGagGUCCGc---UGGUUCU------------ACCGG- -5'
13277 5' -57.4 NC_003409.1 + 133297 0.67 0.772978
Target:  5'- aGCAGaCUgCCAgGGCGuuGCCAGGAguggUGGCg -3'
miRNA:   3'- cCGUC-GA-GGU-CCGC--UGGUUCU----ACCGg -5'
13277 5' -57.4 NC_003409.1 + 133126 0.66 0.851001
Target:  5'- -cCAGCUUCAGG-GucuCCAAGAUGcGCa -3'
miRNA:   3'- ccGUCGAGGUCCgCu--GGUUCUAC-CGg -5'
13277 5' -57.4 NC_003409.1 + 131706 0.75 0.353892
Target:  5'- aGguGCUgCGGGCGGCCAGGGacuaccgcugcgUGGCa -3'
miRNA:   3'- cCguCGAgGUCCGCUGGUUCU------------ACCGg -5'
13277 5' -57.4 NC_003409.1 + 131223 0.67 0.75404
Target:  5'- gGGCAcuGCUcCCAGGCaGcACCAAcgcGGCCa -3'
miRNA:   3'- -CCGU--CGA-GGUCCG-C-UGGUUcuaCCGG- -5'
13277 5' -57.4 NC_003409.1 + 128822 0.67 0.776708
Target:  5'- cGGCaagAGUUCCcuGGGCcgcgggaaggucaugGGCCAAGG-GGCCu -3'
miRNA:   3'- -CCG---UCGAGG--UCCG---------------CUGGUUCUaCCGG- -5'
13277 5' -57.4 NC_003409.1 + 128608 0.72 0.51331
Target:  5'- uGCGGC-CCAGGUGACauuggGGGGUGGgCg -3'
miRNA:   3'- cCGUCGaGGUCCGCUGg----UUCUACCgG- -5'
13277 5' -57.4 NC_003409.1 + 123432 0.68 0.744405
Target:  5'- uGGCAGUUgCCAuauagaguGGCGAgCGuauGUGGCCu -3'
miRNA:   3'- -CCGUCGA-GGU--------CCGCUgGUuc-UACCGG- -5'
13277 5' -57.4 NC_003409.1 + 119959 0.69 0.644175
Target:  5'- cGCGGCgcccacgCCGGcgccuggcacGCGGCCAacauaaaguguGGAUGGCCc -3'
miRNA:   3'- cCGUCGa------GGUC----------CGCUGGU-----------UCUACCGG- -5'
13277 5' -57.4 NC_003409.1 + 119789 0.68 0.714951
Target:  5'- uGGCcGCgugCCAGGCG-CCGGcGUGGgCg -3'
miRNA:   3'- -CCGuCGa--GGUCCGCuGGUUcUACCgG- -5'
13277 5' -57.4 NC_003409.1 + 118407 0.66 0.834856
Target:  5'- gGGguGCgccgcgCCGGGUucCUggGGUGcGCCg -3'
miRNA:   3'- -CCguCGa-----GGUCCGcuGGuuCUAC-CGG- -5'
13277 5' -57.4 NC_003409.1 + 118361 0.66 0.834856
Target:  5'- gGGguGCgccgcgCCGGGUucCUggGGUGcGCCg -3'
miRNA:   3'- -CCguCGa-----GGUCCGcuGGuuCUAC-CGG- -5'
13277 5' -57.4 NC_003409.1 + 118315 0.66 0.834856
Target:  5'- gGGguGCgccgcgCCGGGUucCUggGGUGcGCCg -3'
miRNA:   3'- -CCguCGa-----GGUCCGcuGGuuCUAC-CGG- -5'
13277 5' -57.4 NC_003409.1 + 115600 0.68 0.714951
Target:  5'- uGGCAGCaUgGGGUggGGCC--GGUGGCCu -3'
miRNA:   3'- -CCGUCGaGgUCCG--CUGGuuCUACCGG- -5'
13277 5' -57.4 NC_003409.1 + 115113 0.67 0.763567
Target:  5'- cGGguGCUCCGGGag--CAGGGaGGCUg -3'
miRNA:   3'- -CCguCGAGGUCCgcugGUUCUaCCGG- -5'
13277 5' -57.4 NC_003409.1 + 113969 0.67 0.782263
Target:  5'- uGGCAGCcCCcguGGCGGauucggccgcaCAGGGUGGUg -3'
miRNA:   3'- -CCGUCGaGGu--CCGCUg----------GUUCUACCGg -5'
13277 5' -57.4 NC_003409.1 + 113010 0.66 0.834856
Target:  5'- gGGCGacgcGCUCCaAGGCcuCCcGGA-GGCCg -3'
miRNA:   3'- -CCGU----CGAGG-UCCGcuGGuUCUaCCGG- -5'
13277 5' -57.4 NC_003409.1 + 112441 0.67 0.772978
Target:  5'- gGGCAGCcucgcagUCGGGCGucCCAAGGcaaGGCa -3'
miRNA:   3'- -CCGUCGa------GGUCCGCu-GGUUCUa--CCGg -5'
13277 5' -57.4 NC_003409.1 + 110520 0.68 0.734673
Target:  5'- uGCGGCUUCAGaGgGACUAcauAGaAUGGUCg -3'
miRNA:   3'- cCGUCGAGGUC-CgCUGGU---UC-UACCGG- -5'
13277 5' -57.4 NC_003409.1 + 109488 0.66 0.834856
Target:  5'- cGGCGuGCUCCGGcucccGUGGgcCCAAGAcGGCg -3'
miRNA:   3'- -CCGU-CGAGGUC-----CGCU--GGUUCUaCCGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.