miRNA display CGI


Results 1 - 20 of 73 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13277 5' -57.4 NC_003409.1 + 110520 0.68 0.734673
Target:  5'- uGCGGCUUCAGaGgGACUAcauAGaAUGGUCg -3'
miRNA:   3'- cCGUCGAGGUC-CgCUGGU---UC-UACCGG- -5'
13277 5' -57.4 NC_003409.1 + 51561 0.67 0.782263
Target:  5'- aGGCAGCaCCAcGUgGGCCAAacGGUGGCa -3'
miRNA:   3'- -CCGUCGaGGUcCG-CUGGUU--CUACCGg -5'
13277 5' -57.4 NC_003409.1 + 113969 0.67 0.782263
Target:  5'- uGGCAGCcCCcguGGCGGauucggccgcaCAGGGUGGUg -3'
miRNA:   3'- -CCGUCGaGGu--CCGCUg----------GUUCUACCGg -5'
13277 5' -57.4 NC_003409.1 + 4407 0.67 0.782263
Target:  5'- aGGCAGCUuugccacucuggUCAGGUaGAgCAcAGAguUGGCCg -3'
miRNA:   3'- -CCGUCGA------------GGUCCG-CUgGU-UCU--ACCGG- -5'
13277 5' -57.4 NC_003409.1 + 128822 0.67 0.776708
Target:  5'- cGGCaagAGUUCCcuGGGCcgcgggaaggucaugGGCCAAGG-GGCCu -3'
miRNA:   3'- -CCG---UCGAGG--UCCG---------------CUGGUUCUaCCGG- -5'
13277 5' -57.4 NC_003409.1 + 115113 0.67 0.763567
Target:  5'- cGGguGCUCCGGGag--CAGGGaGGCUg -3'
miRNA:   3'- -CCguCGAGGUCCgcugGUUCUaCCGG- -5'
13277 5' -57.4 NC_003409.1 + 20813 0.67 0.762619
Target:  5'- --uGGCUCCAGGgaguuccUGGCCGGGcgcGGCCu -3'
miRNA:   3'- ccgUCGAGGUCC-------GCUGGUUCua-CCGG- -5'
13277 5' -57.4 NC_003409.1 + 13690 0.67 0.75404
Target:  5'- cGCAGgagacccgCUAGGCGuuCCGgcgAGAUGGCCu -3'
miRNA:   3'- cCGUCga------GGUCCGCu-GGU---UCUACCGG- -5'
13277 5' -57.4 NC_003409.1 + 38440 0.67 0.753081
Target:  5'- gGGaCGGCgccaucaCGGGCG-CCAAGcuggaccAUGGCCa -3'
miRNA:   3'- -CC-GUCGag-----GUCCGCuGGUUC-------UACCGG- -5'
13277 5' -57.4 NC_003409.1 + 105039 0.67 0.791415
Target:  5'- gGGCugguGCUCgucuGGUGGCU--GGUGGCCa -3'
miRNA:   3'- -CCGu---CGAGgu--CCGCUGGuuCUACCGG- -5'
13277 5' -57.4 NC_003409.1 + 42192 0.67 0.800423
Target:  5'- aGCAGCUUCA--UGGCCAcguggGGGUGGCa -3'
miRNA:   3'- cCGUCGAGGUccGCUGGU-----UCUACCGg -5'
13277 5' -57.4 NC_003409.1 + 8881 0.66 0.817976
Target:  5'- aGCAGaccaaCAGGaUGAcaguccCCAGGGUGGCCa -3'
miRNA:   3'- cCGUCgag--GUCC-GCU------GGUUCUACCGG- -5'
13277 5' -57.4 NC_003409.1 + 57081 0.66 0.851001
Target:  5'- --gGGUUCgGGGCGuCCGucucuGGUGGCUg -3'
miRNA:   3'- ccgUCGAGgUCCGCuGGUu----CUACCGG- -5'
13277 5' -57.4 NC_003409.1 + 109274 0.66 0.851001
Target:  5'- cGguGUUCCGGGCaGACCccguccAGGcacggGGCCc -3'
miRNA:   3'- cCguCGAGGUCCG-CUGGu-----UCUa----CCGG- -5'
13277 5' -57.4 NC_003409.1 + 7655 0.66 0.843024
Target:  5'- aGCAGUcucugucuccgUCgCAGGUGGcauCCGAG-UGGCCa -3'
miRNA:   3'- cCGUCG-----------AG-GUCCGCU---GGUUCuACCGG- -5'
13277 5' -57.4 NC_003409.1 + 109488 0.66 0.834856
Target:  5'- cGGCGuGCUCCGGcucccGUGGgcCCAAGAcGGCg -3'
miRNA:   3'- -CCGU-CGAGGUC-----CGCU--GGUUCUaCCGg -5'
13277 5' -57.4 NC_003409.1 + 80628 0.66 0.834856
Target:  5'- cGGCacuguuGGCUaauGGUGGCCAacAGGcUGGCCg -3'
miRNA:   3'- -CCG------UCGAgguCCGCUGGU--UCU-ACCGG- -5'
13277 5' -57.4 NC_003409.1 + 85879 0.66 0.826504
Target:  5'- aGCGGaUCCGcGGUGA-UAGGAUGGCUa -3'
miRNA:   3'- cCGUCgAGGU-CCGCUgGUUCUACCGG- -5'
13277 5' -57.4 NC_003409.1 + 97186 0.66 0.826504
Target:  5'- cGCAGaggUCCAGGCGcuguUCAGGGaGGCa -3'
miRNA:   3'- cCGUCg--AGGUCCGCu---GGUUCUaCCGg -5'
13277 5' -57.4 NC_003409.1 + 133843 0.66 0.817976
Target:  5'- uGGCGGUg-CAGGCuucaACCGGGGacaauuauaacgUGGCCa -3'
miRNA:   3'- -CCGUCGagGUCCGc---UGGUUCU------------ACCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.