miRNA display CGI


Results 21 - 40 of 73 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13277 5' -57.4 NC_003409.1 + 37901 0.69 0.684862
Target:  5'- uGGCAGUgaaUCCGGGaGACCGaacagaAGAUGggacGCCg -3'
miRNA:   3'- -CCGUCG---AGGUCCgCUGGU------UCUAC----CGG- -5'
13277 5' -57.4 NC_003409.1 + 38440 0.67 0.753081
Target:  5'- gGGaCGGCgccaucaCGGGCG-CCAAGcuggaccAUGGCCa -3'
miRNA:   3'- -CC-GUCGag-----GUCCGCuGGUUC-------UACCGG- -5'
13277 5' -57.4 NC_003409.1 + 40977 0.67 0.763567
Target:  5'- gGGCgccAGCUCguGGCGAaucuguuccaCAAGA-GGCUg -3'
miRNA:   3'- -CCG---UCGAGguCCGCUg---------GUUCUaCCGG- -5'
13277 5' -57.4 NC_003409.1 + 42192 0.67 0.800423
Target:  5'- aGCAGCUUCA--UGGCCAcguggGGGUGGCa -3'
miRNA:   3'- cCGUCGAGGUccGCUGGU-----UCUACCGg -5'
13277 5' -57.4 NC_003409.1 + 45901 0.74 0.411709
Target:  5'- uGGC-GCUaauGGCGcCCGGGGUGGCCu -3'
miRNA:   3'- -CCGuCGAgguCCGCuGGUUCUACCGG- -5'
13277 5' -57.4 NC_003409.1 + 49096 0.67 0.753081
Target:  5'- uGGCGGCUCgAcuguGGCGcGCCAccccacuAGGcagGGCCa -3'
miRNA:   3'- -CCGUCGAGgU----CCGC-UGGU-------UCUa--CCGG- -5'
13277 5' -57.4 NC_003409.1 + 51561 0.67 0.782263
Target:  5'- aGGCAGCaCCAcGUgGGCCAAacGGUGGCa -3'
miRNA:   3'- -CCGUCGaGGUcCG-CUGGUU--CUACCGg -5'
13277 5' -57.4 NC_003409.1 + 52584 0.69 0.664571
Target:  5'- aGCAGg-CguGGCGGCCAAGG-GGCg -3'
miRNA:   3'- cCGUCgaGguCCGCUGGUUCUaCCGg -5'
13277 5' -57.4 NC_003409.1 + 54204 0.68 0.708976
Target:  5'- cGGUAGacagagCAGGCGugCAGGGagucguguguuuuucUGGCCg -3'
miRNA:   3'- -CCGUCgag---GUCCGCugGUUCU---------------ACCGG- -5'
13277 5' -57.4 NC_003409.1 + 55012 0.66 0.843024
Target:  5'- uGC-GCUCCuucGGGaGGCUGuAGAUGGCCu -3'
miRNA:   3'- cCGuCGAGG---UCCgCUGGU-UCUACCGG- -5'
13277 5' -57.4 NC_003409.1 + 56073 0.7 0.619655
Target:  5'- uGGCAGCUgaaucagcauauaCAGGUGuCCAAGAcuaaaaaGGCCa -3'
miRNA:   3'- -CCGUCGAg------------GUCCGCuGGUUCUa------CCGG- -5'
13277 5' -57.4 NC_003409.1 + 57081 0.66 0.851001
Target:  5'- --gGGUUCgGGGCGuCCGucucuGGUGGCUg -3'
miRNA:   3'- ccgUCGAGgUCCGCuGGUu----CUACCGG- -5'
13277 5' -57.4 NC_003409.1 + 61867 0.67 0.75404
Target:  5'- aGGCAG-UCCAGGuCGACagcggggacggGGGGUGaGCCu -3'
miRNA:   3'- -CCGUCgAGGUCC-GCUGg----------UUCUAC-CGG- -5'
13277 5' -57.4 NC_003409.1 + 62661 0.66 0.80928
Target:  5'- cGGaCAGCUCguaaacaaAGGCGGCC---GUGGCa -3'
miRNA:   3'- -CC-GUCGAGg-------UCCGCUGGuucUACCGg -5'
13277 5' -57.4 NC_003409.1 + 68179 0.68 0.704979
Target:  5'- cGGCGGagUCCgAGGCGuCCAugGGAUGGg- -3'
miRNA:   3'- -CCGUCg-AGG-UCCGCuGGU--UCUACCgg -5'
13277 5' -57.4 NC_003409.1 + 68832 0.71 0.551803
Target:  5'- uGGCcuCUCUuGGUGGCCGAcacucgcGAUGGCCu -3'
miRNA:   3'- -CCGucGAGGuCCGCUGGUU-------CUACCGG- -5'
13277 5' -57.4 NC_003409.1 + 70883 0.66 0.826504
Target:  5'- --gAGCUUgGGGgGGCaGAGAUGGCg -3'
miRNA:   3'- ccgUCGAGgUCCgCUGgUUCUACCGg -5'
13277 5' -57.4 NC_003409.1 + 71389 0.67 0.756909
Target:  5'- aGGCAGCUaCC-GGCGAcucauuaagccccgcCCAgaaaccaguagcuGGGUGGCa -3'
miRNA:   3'- -CCGUCGA-GGuCCGCU---------------GGU-------------UCUACCGg -5'
13277 5' -57.4 NC_003409.1 + 73110 0.68 0.704979
Target:  5'- uGCAGacgagucgcCUCCAGGCccCCAGGcauuUGGCCu -3'
miRNA:   3'- cCGUC---------GAGGUCCGcuGGUUCu---ACCGG- -5'
13277 5' -57.4 NC_003409.1 + 73931 0.75 0.323523
Target:  5'- gGGCgaagAGCuUCCGGGCggucaugacggaGACCAAGGUGuGCCg -3'
miRNA:   3'- -CCG----UCG-AGGUCCG------------CUGGUUCUAC-CGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.