miRNA display CGI


Results 21 - 40 of 73 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13277 5' -57.4 NC_003409.1 + 103423 0.69 0.674734
Target:  5'- cGGUGGcCUCCcuGGUGGCCuguucGAUGGUCu -3'
miRNA:   3'- -CCGUC-GAGGu-CCGCUGGuu---CUACCGG- -5'
13277 5' -57.4 NC_003409.1 + 37901 0.69 0.684862
Target:  5'- uGGCAGUgaaUCCGGGaGACCGaacagaAGAUGggacGCCg -3'
miRNA:   3'- -CCGUCG---AGGUCCgCUGGU------UCUAC----CGG- -5'
13277 5' -57.4 NC_003409.1 + 78379 0.68 0.694947
Target:  5'- aGCuAGCUCCuGGCGuccguuuCCGGGA-GGCUc -3'
miRNA:   3'- cCG-UCGAGGuCCGCu------GGUUCUaCCGG- -5'
13277 5' -57.4 NC_003409.1 + 87793 0.68 0.694947
Target:  5'- cGCAGguaUCCAcGGgGACguAGAUGGCa -3'
miRNA:   3'- cCGUCg--AGGU-CCgCUGguUCUACCGg -5'
13277 5' -57.4 NC_003409.1 + 73110 0.68 0.704979
Target:  5'- uGCAGacgagucgcCUCCAGGCccCCAGGcauuUGGCCu -3'
miRNA:   3'- cCGUC---------GAGGUCCGcuGGUUCu---ACCGG- -5'
13277 5' -57.4 NC_003409.1 + 68179 0.68 0.704979
Target:  5'- cGGCGGagUCCgAGGCGuCCAugGGAUGGg- -3'
miRNA:   3'- -CCGUCg-AGG-UCCGCuGGU--UCUACCgg -5'
13277 5' -57.4 NC_003409.1 + 54204 0.68 0.708976
Target:  5'- cGGUAGacagagCAGGCGugCAGGGagucguguguuuuucUGGCCg -3'
miRNA:   3'- -CCGUCgag---GUCCGCugGUUCU---------------ACCGG- -5'
13277 5' -57.4 NC_003409.1 + 115600 0.68 0.714951
Target:  5'- uGGCAGCaUgGGGUggGGCC--GGUGGCCu -3'
miRNA:   3'- -CCGUCGaGgUCCG--CUGGuuCUACCGG- -5'
13277 5' -57.4 NC_003409.1 + 119789 0.68 0.714951
Target:  5'- uGGCcGCgugCCAGGCG-CCGGcGUGGgCg -3'
miRNA:   3'- -CCGuCGa--GGUCCGCuGGUUcUACCgG- -5'
13277 5' -57.4 NC_003409.1 + 28787 0.68 0.724851
Target:  5'- gGGCAGUcCCAGuGCuaaacuGACuCAAGcUGGCCc -3'
miRNA:   3'- -CCGUCGaGGUC-CG------CUG-GUUCuACCGG- -5'
13277 5' -57.4 NC_003409.1 + 110520 0.68 0.734673
Target:  5'- uGCGGCUUCAGaGgGACUAcauAGaAUGGUCg -3'
miRNA:   3'- cCGUCGAGGUC-CgCUGGU---UC-UACCGG- -5'
13277 5' -57.4 NC_003409.1 + 123432 0.68 0.744405
Target:  5'- uGGCAGUUgCCAuauagaguGGCGAgCGuauGUGGCCu -3'
miRNA:   3'- -CCGUCGA-GGU--------CCGCUgGUuc-UACCGG- -5'
13277 5' -57.4 NC_003409.1 + 49096 0.67 0.753081
Target:  5'- uGGCGGCUCgAcuguGGCGcGCCAccccacuAGGcagGGCCa -3'
miRNA:   3'- -CCGUCGAGgU----CCGC-UGGU-------UCUa--CCGG- -5'
13277 5' -57.4 NC_003409.1 + 38440 0.67 0.753081
Target:  5'- gGGaCGGCgccaucaCGGGCG-CCAAGcuggaccAUGGCCa -3'
miRNA:   3'- -CC-GUCGag-----GUCCGCuGGUUC-------UACCGG- -5'
13277 5' -57.4 NC_003409.1 + 61867 0.67 0.75404
Target:  5'- aGGCAG-UCCAGGuCGACagcggggacggGGGGUGaGCCu -3'
miRNA:   3'- -CCGUCgAGGUCC-GCUGg----------UUCUAC-CGG- -5'
13277 5' -57.4 NC_003409.1 + 13690 0.67 0.75404
Target:  5'- cGCAGgagacccgCUAGGCGuuCCGgcgAGAUGGCCu -3'
miRNA:   3'- cCGUCga------GGUCCGCu-GGU---UCUACCGG- -5'
13277 5' -57.4 NC_003409.1 + 131223 0.67 0.75404
Target:  5'- gGGCAcuGCUcCCAGGCaGcACCAAcgcGGCCa -3'
miRNA:   3'- -CCGU--CGA-GGUCCG-C-UGGUUcuaCCGG- -5'
13277 5' -57.4 NC_003409.1 + 71389 0.67 0.756909
Target:  5'- aGGCAGCUaCC-GGCGAcucauuaagccccgcCCAgaaaccaguagcuGGGUGGCa -3'
miRNA:   3'- -CCGUCGA-GGuCCGCU---------------GGU-------------UCUACCGg -5'
13277 5' -57.4 NC_003409.1 + 20813 0.67 0.762619
Target:  5'- --uGGCUCCAGGgaguuccUGGCCGGGcgcGGCCu -3'
miRNA:   3'- ccgUCGAGGUCC-------GCUGGUUCua-CCGG- -5'
13277 5' -57.4 NC_003409.1 + 115113 0.67 0.763567
Target:  5'- cGGguGCUCCGGGag--CAGGGaGGCUg -3'
miRNA:   3'- -CCguCGAGGUCCgcugGUUCUaCCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.