miRNA display CGI


Results 21 - 40 of 73 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13277 5' -57.4 NC_003409.1 + 95585 0.67 0.791415
Target:  5'- aGGCAGCgUCCucagAGGCGuccuCCAGc--GGCCc -3'
miRNA:   3'- -CCGUCG-AGG----UCCGCu---GGUUcuaCCGG- -5'
13277 5' -57.4 NC_003409.1 + 118361 0.66 0.834856
Target:  5'- gGGguGCgccgcgCCGGGUucCUggGGUGcGCCg -3'
miRNA:   3'- -CCguCGa-----GGUCCGcuGGuuCUAC-CGG- -5'
13277 5' -57.4 NC_003409.1 + 112441 0.67 0.772978
Target:  5'- gGGCAGCcucgcagUCGGGCGucCCAAGGcaaGGCa -3'
miRNA:   3'- -CCGUCGa------GGUCCGCu-GGUUCUa--CCGg -5'
13277 5' -57.4 NC_003409.1 + 6394 0.71 0.542834
Target:  5'- aGGCGGgggugCCAuGGaCGGCCGAGGgugUGGCCu -3'
miRNA:   3'- -CCGUCga---GGU-CC-GCUGGUUCU---ACCGG- -5'
13277 5' -57.4 NC_003409.1 + 118315 0.66 0.834856
Target:  5'- gGGguGCgccgcgCCGGGUucCUggGGUGcGCCg -3'
miRNA:   3'- -CCguCGa-----GGUCCGcuGGuuCUAC-CGG- -5'
13277 5' -57.4 NC_003409.1 + 62661 0.66 0.80928
Target:  5'- cGGaCAGCUCguaaacaaAGGCGGCC---GUGGCa -3'
miRNA:   3'- -CC-GUCGAGg-------UCCGCUGGuucUACCGg -5'
13277 5' -57.4 NC_003409.1 + 118407 0.66 0.834856
Target:  5'- gGGguGCgccgcgCCGGGUucCUggGGUGcGCCg -3'
miRNA:   3'- -CCguCGa-----GGUCCGcuGGuuCUAC-CGG- -5'
13277 5' -57.4 NC_003409.1 + 32156 0.66 0.843024
Target:  5'- -cCAGCUCUAggaaggcuGGCGACgu-GAUGGCUc -3'
miRNA:   3'- ccGUCGAGGU--------CCGCUGguuCUACCGG- -5'
13277 5' -57.4 NC_003409.1 + 80673 0.74 0.377137
Target:  5'- uGGgAGCaaagugugauauuUCCAGGCGACCAGGAcUGGg- -3'
miRNA:   3'- -CCgUCG-------------AGGUCCGCUGGUUCU-ACCgg -5'
13277 5' -57.4 NC_003409.1 + 22582 0.75 0.330929
Target:  5'- --aAGC-CCAGGCGACCAGGGgucGCCg -3'
miRNA:   3'- ccgUCGaGGUCCGCUGGUUCUac-CGG- -5'
13277 5' -57.4 NC_003409.1 + 56073 0.7 0.619655
Target:  5'- uGGCAGCUgaaucagcauauaCAGGUGuCCAAGAcuaaaaaGGCCa -3'
miRNA:   3'- -CCGUCGAg------------GUCCGCuGGUUCUa------CCGG- -5'
13277 5' -57.4 NC_003409.1 + 87793 0.68 0.694947
Target:  5'- cGCAGguaUCCAcGGgGACguAGAUGGCa -3'
miRNA:   3'- cCGUCg--AGGU-CCgCUGguUCUACCGg -5'
13277 5' -57.4 NC_003409.1 + 19652 0.71 0.552802
Target:  5'- gGGCAcGCgUCCAGGCaACCGGGGucccccucguUGGUCu -3'
miRNA:   3'- -CCGU-CG-AGGUCCGcUGGUUCU----------ACCGG- -5'
13277 5' -57.4 NC_003409.1 + 85879 0.66 0.826504
Target:  5'- aGCGGaUCCGcGGUGA-UAGGAUGGCUa -3'
miRNA:   3'- cCGUCgAGGU-CCGCUgGUUCUACCGG- -5'
13277 5' -57.4 NC_003409.1 + 13545 0.7 0.633958
Target:  5'- cGGC-GUUgCAGGUaACCuuGAUGGCCa -3'
miRNA:   3'- -CCGuCGAgGUCCGcUGGuuCUACCGG- -5'
13277 5' -57.4 NC_003409.1 + 119959 0.69 0.644175
Target:  5'- cGCGGCgcccacgCCGGcgccuggcacGCGGCCAacauaaaguguGGAUGGCCc -3'
miRNA:   3'- cCGUCGa------GGUC----------CGCUGGU-----------UCUACCGG- -5'
13277 5' -57.4 NC_003409.1 + 52584 0.69 0.664571
Target:  5'- aGCAGg-CguGGCGGCCAAGG-GGCg -3'
miRNA:   3'- cCGUCgaGguCCGCUGGUUCUaCCGg -5'
13277 5' -57.4 NC_003409.1 + 103423 0.69 0.674734
Target:  5'- cGGUGGcCUCCcuGGUGGCCuguucGAUGGUCu -3'
miRNA:   3'- -CCGUC-GAGGu-CCGCUGGuu---CUACCGG- -5'
13277 5' -57.4 NC_003409.1 + 113969 0.67 0.782263
Target:  5'- uGGCAGCcCCcguGGCGGauucggccgcaCAGGGUGGUg -3'
miRNA:   3'- -CCGUCGaGGu--CCGCUg----------GUUCUACCGg -5'
13277 5' -57.4 NC_003409.1 + 4407 0.67 0.782263
Target:  5'- aGGCAGCUuugccacucuggUCAGGUaGAgCAcAGAguUGGCCg -3'
miRNA:   3'- -CCGUCGA------------GGUCCG-CUgGU-UCU--ACCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.