Results 41 - 46 of 46 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
13281 | 3' | -52.3 | NC_003409.1 | + | 131372 | 0.69 | 0.909879 |
Target: 5'- aGUGGGuGCAGGggagGcGUCACCAGGUu- -3' miRNA: 3'- cCACCC-CGUUUa---CaCAGUGGUUCGcg -5' |
|||||||
13281 | 3' | -52.3 | NC_003409.1 | + | 126868 | 0.69 | 0.909879 |
Target: 5'- cGGUGGaGGUAAagGUGUUGCgGgAGCGg -3' miRNA: 3'- -CCACC-CCGUUuaCACAGUGgU-UCGCg -5' |
|||||||
13281 | 3' | -52.3 | NC_003409.1 | + | 12020 | 0.68 | 0.925767 |
Target: 5'- uGUGGGuGCGAgguguuugaguccaAUGUGgaCGCCAuuaGGCGCu -3' miRNA: 3'- cCACCC-CGUU--------------UACACa-GUGGU---UCGCG- -5' |
|||||||
13281 | 3' | -52.3 | NC_003409.1 | + | 87542 | 0.67 | 0.951581 |
Target: 5'- uGG-GGGaGCAAucccUGUGgCGCCAgaGGUGCa -3' miRNA: 3'- -CCaCCC-CGUUu---ACACaGUGGU--UCGCG- -5' |
|||||||
13281 | 3' | -52.3 | NC_003409.1 | + | 87162 | 0.67 | 0.955668 |
Target: 5'- -cUGGGGUggGUG-GUgCGCCGgcggagGGCGUg -3' miRNA: 3'- ccACCCCGuuUACaCA-GUGGU------UCGCG- -5' |
|||||||
13281 | 3' | -52.3 | NC_003409.1 | + | 133477 | 0.66 | 0.979944 |
Target: 5'- cGGUGaGGGCccccUGUGUCugUccgccuggaaacaGGGUGCu -3' miRNA: 3'- -CCAC-CCCGuuu-ACACAGugG-------------UUCGCG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home