miRNA display CGI


Results 1 - 20 of 49 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13283 3' -55 NC_003409.1 + 70218 0.65 0.94377
Target:  5'- cGCGGGGGucCCgaguaGUGCACgUCGCCa -3'
miRNA:   3'- -UGCCUCCuuGGaug--CAUGUG-GGUGGg -5'
13283 3' -55 NC_003409.1 + 65054 0.65 0.94377
Target:  5'- aGCGG-GGAaaagcACCaGCGU--AUCCGCCCu -3'
miRNA:   3'- -UGCCuCCU-----UGGaUGCAugUGGGUGGG- -5'
13283 3' -55 NC_003409.1 + 133740 0.66 0.939133
Target:  5'- gGCGuucGGGAuCCacggaGCGUACACCCACguCCa -3'
miRNA:   3'- -UGCc--UCCUuGGa----UGCAUGUGGGUG--GG- -5'
13283 3' -55 NC_003409.1 + 51929 0.66 0.939133
Target:  5'- -aGGcuccGGGAACCgUGCGUggagaaagccuAgACCCGCCUg -3'
miRNA:   3'- ugCC----UCCUUGG-AUGCA-----------UgUGGGUGGG- -5'
13283 3' -55 NC_003409.1 + 15688 0.66 0.939133
Target:  5'- -gGGAGGggUCU--GUACA-CCACCUu -3'
miRNA:   3'- ugCCUCCuuGGAugCAUGUgGGUGGG- -5'
13283 3' -55 NC_003409.1 + 109859 0.66 0.939133
Target:  5'- gGCGGuGGcGCCcgGCGcaacACugCCACCg -3'
miRNA:   3'- -UGCCuCCuUGGa-UGCa---UGugGGUGGg -5'
13283 3' -55 NC_003409.1 + 30107 0.66 0.939133
Target:  5'- gACGGuGGGGCaaAUGUGuCACCaagCGCCCc -3'
miRNA:   3'- -UGCCuCCUUGgaUGCAU-GUGG---GUGGG- -5'
13283 3' -55 NC_003409.1 + 52387 0.66 0.937696
Target:  5'- uCGGAGGcuaguGCCUggauaagagcugccACGU-C-CCCGCCCc -3'
miRNA:   3'- uGCCUCCu----UGGA--------------UGCAuGuGGGUGGG- -5'
13283 3' -55 NC_003409.1 + 103916 0.66 0.934258
Target:  5'- cAUGGAGGGAaugGCcucCACCCACCa -3'
miRNA:   3'- -UGCCUCCUUggaUGcauGUGGGUGGg -5'
13283 3' -55 NC_003409.1 + 86610 0.66 0.934258
Target:  5'- uGCGGGGaccuGGACCUcggGCGc-CGCCUAUCCg -3'
miRNA:   3'- -UGCCUC----CUUGGA---UGCauGUGGGUGGG- -5'
13283 3' -55 NC_003409.1 + 49367 0.66 0.929143
Target:  5'- uACGGuAGGGcuCCUGgGUagcuAUGCCCACCg -3'
miRNA:   3'- -UGCC-UCCUu-GGAUgCA----UGUGGGUGGg -5'
13283 3' -55 NC_003409.1 + 128805 0.66 0.929143
Target:  5'- gAUGGAcaccccGuGAACCguCGUGCuuACCCACCCc -3'
miRNA:   3'- -UGCCU------C-CUUGGauGCAUG--UGGGUGGG- -5'
13283 3' -55 NC_003409.1 + 118760 0.66 0.927561
Target:  5'- cACGGAGGAcggAUCUcuuggauuuacACGUaucgaggagcggugGCACCCcaggaACCCg -3'
miRNA:   3'- -UGCCUCCU---UGGA-----------UGCA--------------UGUGGG-----UGGG- -5'
13283 3' -55 NC_003409.1 + 124081 0.66 0.925958
Target:  5'- uUGGAGGAguaAaggcaggccccguguCCUGCuUGC-CCCACCCu -3'
miRNA:   3'- uGCCUCCU---U---------------GGAUGcAUGuGGGUGGG- -5'
13283 3' -55 NC_003409.1 + 118487 0.66 0.923787
Target:  5'- cGCGGcgcaccccAGGAACCcgGCGcggcGCACCCcaGCCUc -3'
miRNA:   3'- -UGCC--------UCCUUGGa-UGCa---UGUGGG--UGGG- -5'
13283 3' -55 NC_003409.1 + 110877 0.66 0.923787
Target:  5'- aACGu-GGAACuCU-CGUGCugCgGCCCg -3'
miRNA:   3'- -UGCcuCCUUG-GAuGCAUGugGgUGGG- -5'
13283 3' -55 NC_003409.1 + 13550 0.66 0.923787
Target:  5'- uGCGGAGG--CCaauagACGUcuCACCCgacGCCCg -3'
miRNA:   3'- -UGCCUCCuuGGa----UGCAu-GUGGG---UGGG- -5'
13283 3' -55 NC_003409.1 + 114796 0.66 0.923787
Target:  5'- uGCaGAGuGGucACCUGCccugcuccACACCCACCCc -3'
miRNA:   3'- -UGcCUC-CU--UGGAUGca------UGUGGGUGGG- -5'
13283 3' -55 NC_003409.1 + 115431 0.66 0.91819
Target:  5'- -aGGAGGAgGCC-ACcgGC-CCCACCCc -3'
miRNA:   3'- ugCCUCCU-UGGaUGcaUGuGGGUGGG- -5'
13283 3' -55 NC_003409.1 + 22173 0.66 0.917617
Target:  5'- -gGGAGGGACCUGuaaccguCGUuaguaaCCGCCCc -3'
miRNA:   3'- ugCCUCCUUGGAU-------GCAugug--GGUGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.