miRNA display CGI


Results 21 - 40 of 49 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13283 3' -55 NC_003409.1 + 5474 0.67 0.912353
Target:  5'- uCGGAGGAcCCUACaUgaaauuccuaaACGCCCugCa -3'
miRNA:   3'- uGCCUCCUuGGAUGcA-----------UGUGGGugGg -5'
13283 3' -55 NC_003409.1 + 118924 0.67 0.906278
Target:  5'- aAUGGgagcGGGAugCUAgGUccACGCUCACCUc -3'
miRNA:   3'- -UGCC----UCCUugGAUgCA--UGUGGGUGGG- -5'
13283 3' -55 NC_003409.1 + 12265 0.67 0.906278
Target:  5'- uGCGG-GGGGCCggauUGcUGCACucguaCCACCCg -3'
miRNA:   3'- -UGCCuCCUUGGau--GC-AUGUG-----GGUGGG- -5'
13283 3' -55 NC_003409.1 + 105751 0.67 0.899967
Target:  5'- cCGGuugaAGGAGCCcACGUucuCCCGCCa -3'
miRNA:   3'- uGCC----UCCUUGGaUGCAuguGGGUGGg -5'
13283 3' -55 NC_003409.1 + 105289 0.67 0.886647
Target:  5'- aACGGcGGAcgucacACCcgACa-ACACCCACCCc -3'
miRNA:   3'- -UGCCuCCU------UGGa-UGcaUGUGGGUGGG- -5'
13283 3' -55 NC_003409.1 + 100496 0.68 0.875337
Target:  5'- -gGGAGGGucaaGCCUACGUguGCACggggcucgucccgggCCaACCCa -3'
miRNA:   3'- ugCCUCCU----UGGAUGCA--UGUG---------------GG-UGGG- -5'
13283 3' -55 NC_003409.1 + 42734 0.68 0.85733
Target:  5'- cAUGGAGGcGACCUugGaGCAacgaCCuuuCCCg -3'
miRNA:   3'- -UGCCUCC-UUGGAugCaUGUg---GGu--GGG- -5'
13283 3' -55 NC_003409.1 + 97901 0.68 0.85733
Target:  5'- -aGGAGGAGuCCUGCGcgGCagACCCcgaguGCCUg -3'
miRNA:   3'- ugCCUCCUU-GGAUGCa-UG--UGGG-----UGGG- -5'
13283 3' -55 NC_003409.1 + 121358 0.68 0.849474
Target:  5'- -aGGGGGAguuugACCUAgGUAguCCCugguGCCCu -3'
miRNA:   3'- ugCCUCCU-----UGGAUgCAUguGGG----UGGG- -5'
13283 3' -55 NC_003409.1 + 86580 0.68 0.849474
Target:  5'- cCGGAGuGGCUaacggGCGUACGCC-GCCCg -3'
miRNA:   3'- uGCCUCcUUGGa----UGCAUGUGGgUGGG- -5'
13283 3' -55 NC_003409.1 + 118533 0.69 0.833173
Target:  5'- cGCGGcgcaccccAGGAACCcgGCGcggcGCACCCcaggaACCCg -3'
miRNA:   3'- -UGCC--------UCCUUGGa-UGCa---UGUGGG-----UGGG- -5'
13283 3' -55 NC_003409.1 + 82949 0.69 0.833173
Target:  5'- gUGGAGGAACaaaugACGUGgGCCCAgaCg -3'
miRNA:   3'- uGCCUCCUUGga---UGCAUgUGGGUggG- -5'
13283 3' -55 NC_003409.1 + 119655 0.69 0.816136
Target:  5'- cUGGAGGuGACCc-CGUGCACCCgggcGCUCu -3'
miRNA:   3'- uGCCUCC-UUGGauGCAUGUGGG----UGGG- -5'
13283 3' -55 NC_003409.1 + 5304 0.69 0.816136
Target:  5'- -aGGAGGGAUgUu--UGCACCCGCUCg -3'
miRNA:   3'- ugCCUCCUUGgAugcAUGUGGGUGGG- -5'
13283 3' -55 NC_003409.1 + 23355 0.69 0.816136
Target:  5'- cUGGAGGuGACCc-CGUGCACCCgggcGCUCu -3'
miRNA:   3'- uGCCUCC-UUGGauGCAUGUGGG----UGGG- -5'
13283 3' -55 NC_003409.1 + 118304 0.69 0.798427
Target:  5'- -gGGAGGAGgCUgGgGUGCGCCgCGCCg -3'
miRNA:   3'- ugCCUCCUUgGA-UgCAUGUGG-GUGGg -5'
13283 3' -55 NC_003409.1 + 118578 0.69 0.798427
Target:  5'- cGCGGcgcaccccAGGAACCcgGCGcggcGCACCCaggaACCCg -3'
miRNA:   3'- -UGCC--------UCCUUGGa-UGCa---UGUGGG----UGGG- -5'
13283 3' -55 NC_003409.1 + 25901 0.7 0.741954
Target:  5'- -aGGGGGAcagcgcguaccgACCUAUGcGCGCCCACa- -3'
miRNA:   3'- ugCCUCCU------------UGGAUGCaUGUGGGUGgg -5'
13283 3' -55 NC_003409.1 + 133345 0.71 0.73215
Target:  5'- cACGGAuGGACCgg---ACACCUACCCu -3'
miRNA:   3'- -UGCCUcCUUGGaugcaUGUGGGUGGG- -5'
13283 3' -55 NC_003409.1 + 87181 0.71 0.702251
Target:  5'- gGCGGAGGGcgugGCCg----ACGCgCCACCCu -3'
miRNA:   3'- -UGCCUCCU----UGGaugcaUGUG-GGUGGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.