Results 41 - 49 of 49 are showing below:
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| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
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| Predicted miRNA align pattern | |||||||
| 13283 | 3' | -55 | NC_003409.1 | + | 51800 | 0.72 | 0.684039 |
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Target: 5'- uUGGAGGAACUgcagaggcuggcGCGUgcuacgccggacccgGCACUCACCCg -3' miRNA: 3'- uGCCUCCUUGGa-----------UGCA---------------UGUGGGUGGG- -5' |
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| 13283 | 3' | -55 | NC_003409.1 | + | 34521 | 0.72 | 0.671816 |
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Target: 5'- ---cAGGGACCUGCGcgGCgagcucauGCCCACCCu -3' miRNA: 3'- ugccUCCUUGGAUGCa-UG--------UGGGUGGG- -5' |
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| 13283 | 3' | -55 | NC_003409.1 | + | 131696 | 0.72 | 0.661594 |
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Target: 5'- gGCGGccAGGGACuaccgCUGCGUggcACACCCACUg -3' miRNA: 3'- -UGCC--UCCUUG-----GAUGCA---UGUGGGUGGg -5' |
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| 13283 | 3' | -55 | NC_003409.1 | + | 93371 | 0.73 | 0.620552 |
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Target: 5'- uGCGGAGGAugUUguggGCGUggcgACugCCGCCg -3' miRNA: 3'- -UGCCUCCUugGA----UGCA----UGugGGUGGg -5' |
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| 13283 | 3' | -55 | NC_003409.1 | + | 114579 | 0.74 | 0.569498 |
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Target: 5'- uGCGGgugucgcgcuuuGGGGGCCUGCcaGC-CCCACCCc -3' miRNA: 3'- -UGCC------------UCCUUGGAUGcaUGuGGGUGGG- -5' |
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| 13283 | 3' | -55 | NC_003409.1 | + | 52154 | 0.74 | 0.559393 |
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Target: 5'- cACGGGGGGugGCCUgugGCGUgugcGCGCUgGCCCc -3' miRNA: 3'- -UGCCUCCU--UGGA---UGCA----UGUGGgUGGG- -5' |
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| 13283 | 3' | -55 | NC_003409.1 | + | 13662 | 0.75 | 0.500032 |
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Target: 5'- cGCGGAGGAGCUaGCGU-CAaucaCCACCa -3' miRNA: 3'- -UGCCUCCUUGGaUGCAuGUg---GGUGGg -5' |
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| 13283 | 3' | -55 | NC_003409.1 | + | 44289 | 0.75 | 0.462042 |
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Target: 5'- cACGGAGG-AUCUAC-UGCACCCaACCUc -3' miRNA: 3'- -UGCCUCCuUGGAUGcAUGUGGG-UGGG- -5' |
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| 13283 | 3' | -55 | NC_003409.1 | + | 31268 | 1.12 | 0.002203 |
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Target: 5'- cACGGAGGAACCUACGUACACCCACCCa -3' miRNA: 3'- -UGCCUCCUUGGAUGCAUGUGGGUGGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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