miRNA display CGI


Results 41 - 60 of 71 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13289 3' -56 NC_003409.1 + 15989 0.67 0.832071
Target:  5'- cGGGCucgccgcGCCCGAGCUGUCGUUUacuACUg -3'
miRNA:   3'- uCCCG-------UGGGUUUGGCGGCGAAcu-UGG- -5'
13289 3' -56 NC_003409.1 + 56971 0.67 0.840377
Target:  5'- cAGGGUggugaugACUCAGAuccuguCCGCUGUgUGGACCa -3'
miRNA:   3'- -UCCCG-------UGGGUUU------GGCGGCGaACUUGG- -5'
13289 3' -56 NC_003409.1 + 113357 0.67 0.841197
Target:  5'- uGGGCG-CCAAGCaGCUGCUgc-GCCg -3'
miRNA:   3'- uCCCGUgGGUUUGgCGGCGAacuUGG- -5'
13289 3' -56 NC_003409.1 + 108369 0.67 0.841197
Target:  5'- cGGGCGCCCcgAGAUCGCacugggugccUGCUguaaGAGCUg -3'
miRNA:   3'- uCCCGUGGG--UUUGGCG----------GCGAa---CUUGG- -5'
13289 3' -56 NC_003409.1 + 118553 0.67 0.846077
Target:  5'- cGGcGCACCCAGGaacCCGgCGCggcgcaccccagGAACCc -3'
miRNA:   3'- uCC-CGUGGGUUU---GGCgGCGaa----------CUUGG- -5'
13289 3' -56 NC_003409.1 + 133934 0.67 0.849291
Target:  5'- gAGGGUcCCCAGcCCGUgGCUa-GGCCa -3'
miRNA:   3'- -UCCCGuGGGUUuGGCGgCGAacUUGG- -5'
13289 3' -56 NC_003409.1 + 87599 0.67 0.849291
Target:  5'- cGGGCuCCuCAGGgUGCUGCgagUGAGCg -3'
miRNA:   3'- uCCCGuGG-GUUUgGCGGCGa--ACUUGg -5'
13289 3' -56 NC_003409.1 + 128200 0.67 0.857185
Target:  5'- cGGGCACCCccAACCG-CGCcaagGAgggcuaGCCa -3'
miRNA:   3'- uCCCGUGGGu-UUGGCgGCGaa--CU------UGG- -5'
13289 3' -56 NC_003409.1 + 72215 0.67 0.857185
Target:  5'- cAGGGaauaAgCCAAauucGCCcuaGCCGCggGAACCa -3'
miRNA:   3'- -UCCCg---UgGGUU----UGG---CGGCGaaCUUGG- -5'
13289 3' -56 NC_003409.1 + 87567 0.66 0.863352
Target:  5'- gAGGuGCACCCuggcugaacucACCGacaaauguucCCGCUUGGGCg -3'
miRNA:   3'- -UCC-CGUGGGuu---------UGGC----------GGCGAACUUGg -5'
13289 3' -56 NC_003409.1 + 88285 0.66 0.864113
Target:  5'- uAGGGUACCUAAAguauuucCCGCCGac---ACCa -3'
miRNA:   3'- -UCCCGUGGGUUU-------GGCGGCgaacuUGG- -5'
13289 3' -56 NC_003409.1 + 107709 0.66 0.864872
Target:  5'- --cGCACCauaGGGCUGCCGCU-GGugCg -3'
miRNA:   3'- uccCGUGGg--UUUGGCGGCGAaCUugG- -5'
13289 3' -56 NC_003409.1 + 102006 0.66 0.864872
Target:  5'- --uGCACCCAGGcCCGCCuggaauccuuUUUGAGCCg -3'
miRNA:   3'- uccCGUGGGUUU-GGCGGc---------GAACUUGG- -5'
13289 3' -56 NC_003409.1 + 28641 0.66 0.864872
Target:  5'- uGGGacuGCCCAGucaccuugGCUGCCGCUUc-ACCu -3'
miRNA:   3'- uCCCg--UGGGUU--------UGGCGGCGAAcuUGG- -5'
13289 3' -56 NC_003409.1 + 103802 0.66 0.864872
Target:  5'- cAGGaCACCCGAcccGCCaGCCGCccccuGCCg -3'
miRNA:   3'- -UCCcGUGGGUU---UGG-CGGCGaacu-UGG- -5'
13289 3' -56 NC_003409.1 + 40965 0.66 0.864872
Target:  5'- uGGcuuGCAUUaggCGAGCCGCCGCccgGGGCCu -3'
miRNA:   3'- uCC---CGUGG---GUUUGGCGGCGaa-CUUGG- -5'
13289 3' -56 NC_003409.1 + 131962 0.66 0.872347
Target:  5'- -aGGCACCCAAuACC-CC-CUcUGAACCc -3'
miRNA:   3'- ucCCGUGGGUU-UGGcGGcGA-ACUUGG- -5'
13289 3' -56 NC_003409.1 + 97732 0.66 0.872347
Target:  5'- -aGGCACUCGGgguCUGCCGCgcaGGACUc -3'
miRNA:   3'- ucCCGUGGGUUu--GGCGGCGaa-CUUGG- -5'
13289 3' -56 NC_003409.1 + 93941 0.66 0.875276
Target:  5'- uGGGCugCUuuggacggcuauuaaGGACCGCCaaUcGAGCCa -3'
miRNA:   3'- uCCCGugGG---------------UUUGGCGGcgAaCUUGG- -5'
13289 3' -56 NC_003409.1 + 18940 0.66 0.879603
Target:  5'- cGGGGCcaucuuggucGCCUGGACUGCCcccGCg-GGGCCa -3'
miRNA:   3'- -UCCCG----------UGGGUUUGGCGG---CGaaCUUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.