miRNA display CGI


Results 1 - 20 of 45 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13291 5' -63.4 NC_003409.1 + 35411 1.11 0.000493
Target:  5'- cGGGCCCACCUGGCCACCUACCGCCGGc -3'
miRNA:   3'- -CCCGGGUGGACCGGUGGAUGGCGGCC- -5'
13291 5' -63.4 NC_003409.1 + 40363 0.82 0.061755
Target:  5'- --uCCCACCaUGGCCGCC-ACCGCCGGa -3'
miRNA:   3'- cccGGGUGG-ACCGGUGGaUGGCGGCC- -5'
13291 5' -63.4 NC_003409.1 + 107956 0.8 0.081711
Target:  5'- -uGCCCACCgUGGCCugCUGCaaauCGCCGGa -3'
miRNA:   3'- ccCGGGUGG-ACCGGugGAUG----GCGGCC- -5'
13291 5' -63.4 NC_003409.1 + 130934 0.73 0.233171
Target:  5'- cGGCCCACUacacccagGGCCACCaGCaGCUGGa -3'
miRNA:   3'- cCCGGGUGGa-------CCGGUGGaUGgCGGCC- -5'
13291 5' -63.4 NC_003409.1 + 24736 0.72 0.279621
Target:  5'- gGGGCgCGCCggGGCU-CCUgggguGCUGCCGGg -3'
miRNA:   3'- -CCCGgGUGGa-CCGGuGGA-----UGGCGGCC- -5'
13291 5' -63.4 NC_003409.1 + 18940 0.71 0.292328
Target:  5'- cGGGgCCAUCuUGGUCGCCUGgacugcccCCGCgGGg -3'
miRNA:   3'- -CCCgGGUGG-ACCGGUGGAU--------GGCGgCC- -5'
13291 5' -63.4 NC_003409.1 + 52424 0.71 0.305482
Target:  5'- -cGCCC-CUUGGCCGCCacGCCuGCUGGa -3'
miRNA:   3'- ccCGGGuGGACCGGUGGa-UGG-CGGCC- -5'
13291 5' -63.4 NC_003409.1 + 68096 0.7 0.347638
Target:  5'- uGGGCCCGUCUGGCCAgagGCC-UCGGg -3'
miRNA:   3'- -CCCGGGUGGACCGGUggaUGGcGGCC- -5'
13291 5' -63.4 NC_003409.1 + 133625 0.7 0.370224
Target:  5'- gGGGCCCucaccgGCCUGuauGCCACCgaaccgGCC-CUGGg -3'
miRNA:   3'- -CCCGGG------UGGAC---CGGUGGa-----UGGcGGCC- -5'
13291 5' -63.4 NC_003409.1 + 119768 0.7 0.370224
Target:  5'- aGGGCCauccaCACUuuauguUGGCCGCgUGCCaggcGCCGGc -3'
miRNA:   3'- -CCCGG-----GUGG------ACCGGUGgAUGG----CGGCC- -5'
13291 5' -63.4 NC_003409.1 + 43697 0.69 0.385828
Target:  5'- cGGa-CGCC-GGCCACCUGCUGCCc- -3'
miRNA:   3'- cCCggGUGGaCCGGUGGAUGGCGGcc -5'
13291 5' -63.4 NC_003409.1 + 67977 0.69 0.393792
Target:  5'- aGGGCCCuCgUGGCgcccCCUGCgCGCCGc -3'
miRNA:   3'- -CCCGGGuGgACCGgu--GGAUG-GCGGCc -5'
13291 5' -63.4 NC_003409.1 + 90446 0.69 0.410035
Target:  5'- aGGGCUCAauc-GCCGCCUcgGCUGUCGGg -3'
miRNA:   3'- -CCCGGGUggacCGGUGGA--UGGCGGCC- -5'
13291 5' -63.4 NC_003409.1 + 73060 0.69 0.416648
Target:  5'- aGGGCCCucuGCCUuuugguuuuccaaccGGuCUACCUuccgaggauuauggcGCCGCUGGa -3'
miRNA:   3'- -CCCGGG---UGGA---------------CC-GGUGGA---------------UGGCGGCC- -5'
13291 5' -63.4 NC_003409.1 + 109750 0.68 0.435164
Target:  5'- uGGUCCACCUugcGGCCcCUUACUGCgGa -3'
miRNA:   3'- cCCGGGUGGA---CCGGuGGAUGGCGgCc -5'
13291 5' -63.4 NC_003409.1 + 74162 0.68 0.443736
Target:  5'- uGGGUguugUCGCCUcuGCCGCCguaGCCGCCGc -3'
miRNA:   3'- -CCCG----GGUGGAc-CGGUGGa--UGGCGGCc -5'
13291 5' -63.4 NC_003409.1 + 23799 0.68 0.443736
Target:  5'- uGGGuucaCCCACCUGGguaUACCUACUggauuacccaGCUGGg -3'
miRNA:   3'- -CCC----GGGUGGACCg--GUGGAUGG----------CGGCC- -5'
13291 5' -63.4 NC_003409.1 + 112786 0.68 0.461161
Target:  5'- -cGCCCGCUUGGCaagg-GCCGCgCGGg -3'
miRNA:   3'- ccCGGGUGGACCGguggaUGGCG-GCC- -5'
13291 5' -63.4 NC_003409.1 + 133482 0.68 0.461161
Target:  5'- aGGGCCC-CCUGuGUCugU--CCGCCuGGa -3'
miRNA:   3'- -CCCGGGuGGAC-CGGugGauGGCGG-CC- -5'
13291 5' -63.4 NC_003409.1 + 84408 0.68 0.470008
Target:  5'- cGGGCguuacaaucUCGCCUGGCaaGCaCUGCC-CCGGg -3'
miRNA:   3'- -CCCG---------GGUGGACCGg-UG-GAUGGcGGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.