Results 1 - 20 of 39 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
13294 | 3' | -55.9 | NC_003409.1 | + | 73843 | 0.66 | 0.915251 |
Target: 5'- aCAgUCCGGGcCCGGUgGUGCaGuuGCCa -3' miRNA: 3'- cGUgAGGUUC-GGUCAgCAUG-CgcCGG- -5' |
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13294 | 3' | -55.9 | NC_003409.1 | + | 52484 | 0.66 | 0.915251 |
Target: 5'- aCACUCUAGGUUuggAGU--UACGCGGCg -3' miRNA: 3'- cGUGAGGUUCGG---UCAgcAUGCGCCGg -5' |
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13294 | 3' | -55.9 | NC_003409.1 | + | 33330 | 0.66 | 0.909306 |
Target: 5'- -gGCUgCcuGCCGGUgGUccuCGCGGUCg -3' miRNA: 3'- cgUGAgGuuCGGUCAgCAu--GCGCCGG- -5' |
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13294 | 3' | -55.9 | NC_003409.1 | + | 90304 | 0.66 | 0.909306 |
Target: 5'- gGCG-UCCAgacgccGGCCAGUUGUugGCGa-- -3' miRNA: 3'- -CGUgAGGU------UCGGUCAGCAugCGCcgg -5' |
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13294 | 3' | -55.9 | NC_003409.1 | + | 52952 | 0.66 | 0.909306 |
Target: 5'- uGUACgUCgUAAGCCAGUgUGUuucugUGCGGCCc -3' miRNA: 3'- -CGUG-AG-GUUCGGUCA-GCAu----GCGCCGG- -5' |
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13294 | 3' | -55.9 | NC_003409.1 | + | 120295 | 0.66 | 0.903124 |
Target: 5'- gGCGCUCaacGCCAaUa-UGCGCGGCUg -3' miRNA: 3'- -CGUGAGguuCGGUcAgcAUGCGCCGG- -5' |
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13294 | 3' | -55.9 | NC_003409.1 | + | 28956 | 0.66 | 0.903124 |
Target: 5'- --uCUCCAGGCCAGUUGUA-GCccCCu -3' miRNA: 3'- cguGAGGUUCGGUCAGCAUgCGccGG- -5' |
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13294 | 3' | -55.9 | NC_003409.1 | + | 89103 | 0.66 | 0.895397 |
Target: 5'- cGCACgcagcauaagacCCGAGCCAGUCGcgcccuccauCGC-GCCu -3' miRNA: 3'- -CGUGa-----------GGUUCGGUCAGCau--------GCGcCGG- -5' |
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13294 | 3' | -55.9 | NC_003409.1 | + | 12098 | 0.66 | 0.890062 |
Target: 5'- uGCACagCAuauuguuGUguGUCGUACGCGcGCa -3' miRNA: 3'- -CGUGagGUu------CGguCAGCAUGCGC-CGg -5' |
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13294 | 3' | -55.9 | NC_003409.1 | + | 131224 | 0.66 | 0.887339 |
Target: 5'- gGCACUgcucCCAGGCagcaccaACGCGGCCa -3' miRNA: 3'- -CGUGA----GGUUCGgucagcaUGCGCCGG- -5' |
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13294 | 3' | -55.9 | NC_003409.1 | + | 85803 | 0.66 | 0.883187 |
Target: 5'- --uCUCCAGG-CAGUUGgGCGgGGCUg -3' miRNA: 3'- cguGAGGUUCgGUCAGCaUGCgCCGG- -5' |
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13294 | 3' | -55.9 | NC_003409.1 | + | 45578 | 0.66 | 0.883187 |
Target: 5'- -aACUCUggGCCGGgucccgcuUUGUGaucacgcgaGCGGCCu -3' miRNA: 3'- cgUGAGGuuCGGUC--------AGCAUg--------CGCCGG- -5' |
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13294 | 3' | -55.9 | NC_003409.1 | + | 133125 | 0.67 | 0.87609 |
Target: 5'- cGCAC-CCAccuGCCuG-CGgauccCGCGGCCg -3' miRNA: 3'- -CGUGaGGUu--CGGuCaGCau---GCGCCGG- -5' |
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13294 | 3' | -55.9 | NC_003409.1 | + | 46593 | 0.67 | 0.87609 |
Target: 5'- aCGCUgCgAAGCCcacgGGUUGUugGUGGaCCg -3' miRNA: 3'- cGUGA-GgUUCGG----UCAGCAugCGCC-GG- -5' |
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13294 | 3' | -55.9 | NC_003409.1 | + | 35235 | 0.67 | 0.87609 |
Target: 5'- aGUACUUgagGAGCCGG-CgGUAgGUGGCCa -3' miRNA: 3'- -CGUGAGg--UUCGGUCaG-CAUgCGCCGG- -5' |
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13294 | 3' | -55.9 | NC_003409.1 | + | 55750 | 0.67 | 0.87609 |
Target: 5'- aGCGCgaagCCGAGCuCGGgacucugGUACGCaaggcgGGCCa -3' miRNA: 3'- -CGUGa---GGUUCG-GUCag-----CAUGCG------CCGG- -5' |
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13294 | 3' | -55.9 | NC_003409.1 | + | 54425 | 0.67 | 0.868774 |
Target: 5'- cGCACgucUCCAcGGCCgaucaacuGGUCGagUACcagGCGGCCa -3' miRNA: 3'- -CGUG---AGGU-UCGG--------UCAGC--AUG---CGCCGG- -5' |
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13294 | 3' | -55.9 | NC_003409.1 | + | 51921 | 0.67 | 0.861245 |
Target: 5'- gGCGCUCgAGGCUccGGgaacCGUGCGUGGa- -3' miRNA: 3'- -CGUGAGgUUCGG--UCa---GCAUGCGCCgg -5' |
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13294 | 3' | -55.9 | NC_003409.1 | + | 40110 | 0.67 | 0.861245 |
Target: 5'- gGCACUCCGGuaguaucuGCguGUCcucgaauuCGUGGCCg -3' miRNA: 3'- -CGUGAGGUU--------CGguCAGcau-----GCGCCGG- -5' |
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13294 | 3' | -55.9 | NC_003409.1 | + | 58061 | 0.67 | 0.853509 |
Target: 5'- aGCAuUUCCAAGCCugcGGUUgaGUACGUGGg- -3' miRNA: 3'- -CGU-GAGGUUCGG---UCAG--CAUGCGCCgg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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