miRNA display CGI


Results 1 - 20 of 45 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13310 5' -48.4 NC_003409.1 + 88258 0.66 0.999341
Target:  5'- --uGCUCCGugUGgaUACCAGuGAAUg -3'
miRNA:   3'- ucuUGAGGCugACaaGUGGUC-UUUGg -5'
13310 5' -48.4 NC_003409.1 + 73936 0.66 0.999341
Target:  5'- aAGAGCuUCCgGGCgg-UCAUgaCGGAGACCa -3'
miRNA:   3'- -UCUUG-AGG-CUGacaAGUG--GUCUUUGG- -5'
13310 5' -48.4 NC_003409.1 + 39585 0.66 0.999341
Target:  5'- aAGAACUCCcgcucGugUGUUUuCgCAGggGCa -3'
miRNA:   3'- -UCUUGAGG-----CugACAAGuG-GUCuuUGg -5'
13310 5' -48.4 NC_003409.1 + 133309 0.66 0.999186
Target:  5'- cGAcaGCUCCGACaaugcgGUgcgCAUCuuGGAGACCc -3'
miRNA:   3'- uCU--UGAGGCUGa-----CAa--GUGG--UCUUUGG- -5'
13310 5' -48.4 NC_003409.1 + 85585 0.66 0.999186
Target:  5'- aAGcACUUuuuuaGACUG-UC-CCAGAAACCa -3'
miRNA:   3'- -UCuUGAGg----CUGACaAGuGGUCUUUGG- -5'
13310 5' -48.4 NC_003409.1 + 32115 0.66 0.999
Target:  5'- gGGGGCUCUGGCcacgugggaggUGUcCGCCAGccuggauGCCa -3'
miRNA:   3'- -UCUUGAGGCUG-----------ACAaGUGGUCuu-----UGG- -5'
13310 5' -48.4 NC_003409.1 + 82423 0.66 0.998488
Target:  5'- uGGGAUUcccugggCCGACUGggUACCAcGGAugCg -3'
miRNA:   3'- -UCUUGA-------GGCUGACaaGUGGU-CUUugG- -5'
13310 5' -48.4 NC_003409.1 + 103833 0.67 0.998338
Target:  5'- cGAACUCCGuuuugucccacugacGCUGgcaggccuCCGGAAACUg -3'
miRNA:   3'- uCUUGAGGC---------------UGACaagu----GGUCUUUGG- -5'
13310 5' -48.4 NC_003409.1 + 98152 0.67 0.998209
Target:  5'- cAGGGCgCCGuuUGUagACCAG-AGCCa -3'
miRNA:   3'- -UCUUGaGGCugACAagUGGUCuUUGG- -5'
13310 5' -48.4 NC_003409.1 + 118474 0.67 0.998107
Target:  5'- aGGAAC-CCGGCgcgGcgCACCccagccuccuccccGGGAACCu -3'
miRNA:   3'- -UCUUGaGGCUGa--CaaGUGG--------------UCUUUGG- -5'
13310 5' -48.4 NC_003409.1 + 97094 0.67 0.997849
Target:  5'- uGGACaUCCGGagGUUC-CUGGAAGCCa -3'
miRNA:   3'- uCUUG-AGGCUgaCAAGuGGUCUUUGG- -5'
13310 5' -48.4 NC_003409.1 + 68096 0.67 0.997431
Target:  5'- uGGGC-CCGuCUG---GCCAGAGGCCu -3'
miRNA:   3'- uCUUGaGGCuGACaagUGGUCUUUGG- -5'
13310 5' -48.4 NC_003409.1 + 24301 0.67 0.996947
Target:  5'- aGGAGCcCCGGCaGcaCcCCAGGAGCCc -3'
miRNA:   3'- -UCUUGaGGCUGaCaaGuGGUCUUUGG- -5'
13310 5' -48.4 NC_003409.1 + 24341 0.67 0.996947
Target:  5'- aGGAGCcCCGGCaGcaCcCCAGGAGCCc -3'
miRNA:   3'- -UCUUGaGGCUGaCaaGuGGUCUUUGG- -5'
13310 5' -48.4 NC_003409.1 + 24381 0.67 0.996947
Target:  5'- aGGAGCcCCGGCaGcaCcCCAGGAGCCc -3'
miRNA:   3'- -UCUUGaGGCUGaCaaGuGGUCUUUGG- -5'
13310 5' -48.4 NC_003409.1 + 24501 0.67 0.996947
Target:  5'- aGGAGCcCCGGCaGcaCcCCAGGAGCCc -3'
miRNA:   3'- -UCUUGaGGCUGaCaaGuGGUCUUUGG- -5'
13310 5' -48.4 NC_003409.1 + 24461 0.67 0.996947
Target:  5'- aGGAGCcCCGGCaGcaCcCCAGGAGCCc -3'
miRNA:   3'- -UCUUGaGGCUGaCaaGuGGUCUUUGG- -5'
13310 5' -48.4 NC_003409.1 + 49693 0.67 0.996947
Target:  5'- uGAACUCCGcaccCUGagCGCCAGccAGACg -3'
miRNA:   3'- uCUUGAGGCu---GACaaGUGGUC--UUUGg -5'
13310 5' -48.4 NC_003409.1 + 24421 0.67 0.996947
Target:  5'- aGGAGCcCCGGCaGcaCcCCAGGAGCCc -3'
miRNA:   3'- -UCUUGaGGCUGaCaaGuGGUCUUUGG- -5'
13310 5' -48.4 NC_003409.1 + 24541 0.67 0.996947
Target:  5'- aGGAGCcCCGGCaGcaCcCCAGGAGCCc -3'
miRNA:   3'- -UCUUGaGGCUGaCaaGuGGUCUUUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.