miRNA display CGI


Results 1 - 20 of 65 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13311 3' -53.5 NC_003409.1 + 103286 0.66 0.956906
Target:  5'- cGACACAGCuUGUCu--CCAAgguUGGCCa -3'
miRNA:   3'- uCUGUGUCG-ACAGuguGGUU---GUCGGg -5'
13311 3' -53.5 NC_003409.1 + 106236 0.66 0.956906
Target:  5'- uGcCACuGCUGagcaUCACcuuACCAACGuGCCCa -3'
miRNA:   3'- uCuGUGuCGAC----AGUG---UGGUUGU-CGGG- -5'
13311 3' -53.5 NC_003409.1 + 105283 0.66 0.956906
Target:  5'- cGACauaACGGCggacGUCACACCcGACAacaCCCa -3'
miRNA:   3'- uCUG---UGUCGa---CAGUGUGG-UUGUc--GGG- -5'
13311 3' -53.5 NC_003409.1 + 60859 0.66 0.956517
Target:  5'- uAGAUAgAGCUGUgCcacguuccgguggACGCCGcgGGCCCg -3'
miRNA:   3'- -UCUGUgUCGACA-G-------------UGUGGUugUCGGG- -5'
13311 3' -53.5 NC_003409.1 + 53374 0.66 0.952902
Target:  5'- aAGA-ACAGCaGcCACACCGAUccGCCCc -3'
miRNA:   3'- -UCUgUGUCGaCaGUGUGGUUGu-CGGG- -5'
13311 3' -53.5 NC_003409.1 + 113109 0.66 0.952902
Target:  5'- aGGGCACcuccAGgaGgggacgaCGCGgCAACGGCCCa -3'
miRNA:   3'- -UCUGUG----UCgaCa------GUGUgGUUGUCGGG- -5'
13311 3' -53.5 NC_003409.1 + 133008 0.66 0.952902
Target:  5'- gAGACaaACAGCUccaggccgGUCcgcgGCGCCAGC-GCCUg -3'
miRNA:   3'- -UCUG--UGUCGA--------CAG----UGUGGUUGuCGGG- -5'
13311 3' -53.5 NC_003409.1 + 4585 0.66 0.952902
Target:  5'- gGGGCAaugucCAGCUGUaUGCAUCAACAcGCUg -3'
miRNA:   3'- -UCUGU-----GUCGACA-GUGUGGUUGU-CGGg -5'
13311 3' -53.5 NC_003409.1 + 81314 0.66 0.952902
Target:  5'- aAGAUACuAGuCUGUCACcccgcccCCAACGGCa- -3'
miRNA:   3'- -UCUGUG-UC-GACAGUGu------GGUUGUCGgg -5'
13311 3' -53.5 NC_003409.1 + 22586 0.66 0.952902
Target:  5'- uGAUugAGCUaugUGCgGCCAGCGGUCCu -3'
miRNA:   3'- uCUGugUCGAca-GUG-UGGUUGUCGGG- -5'
13311 3' -53.5 NC_003409.1 + 128331 0.66 0.948655
Target:  5'- uGGCcgGCAGgUGUCAUGC--ACAGCCUg -3'
miRNA:   3'- uCUG--UGUCgACAGUGUGguUGUCGGG- -5'
13311 3' -53.5 NC_003409.1 + 10041 0.66 0.948655
Target:  5'- cGGACAUgGGCUGcCAgACCAAauagAGUCCg -3'
miRNA:   3'- -UCUGUG-UCGACaGUgUGGUUg---UCGGG- -5'
13311 3' -53.5 NC_003409.1 + 26145 0.66 0.948655
Target:  5'- -uGCACAaCgc-CACGCCGACaAGCCCa -3'
miRNA:   3'- ucUGUGUcGacaGUGUGGUUG-UCGGG- -5'
13311 3' -53.5 NC_003409.1 + 20372 0.66 0.944161
Target:  5'- uGAUACAGCUGaCAggaaagcuCACCGuCAGCUa -3'
miRNA:   3'- uCUGUGUCGACaGU--------GUGGUuGUCGGg -5'
13311 3' -53.5 NC_003409.1 + 51425 0.66 0.943698
Target:  5'- aGGACcuuuCuGCUGcaUCACGCCAuaccccuGgAGCCCg -3'
miRNA:   3'- -UCUGu---GuCGAC--AGUGUGGU-------UgUCGGG- -5'
13311 3' -53.5 NC_003409.1 + 85319 0.66 0.939418
Target:  5'- cGGCAUAGCUGUgCuuACCAcuggacauuGCGGCgCg -3'
miRNA:   3'- uCUGUGUCGACA-GugUGGU---------UGUCGgG- -5'
13311 3' -53.5 NC_003409.1 + 49877 0.66 0.939418
Target:  5'- -aACGCGGCgGUCgaagGCAaCAGCAGCCa -3'
miRNA:   3'- ucUGUGUCGaCAG----UGUgGUUGUCGGg -5'
13311 3' -53.5 NC_003409.1 + 62272 0.66 0.939418
Target:  5'- cAGACucugaaAGCUGUC-CGgCAAguUAGCCCa -3'
miRNA:   3'- -UCUGug----UCGACAGuGUgGUU--GUCGGG- -5'
13311 3' -53.5 NC_003409.1 + 50170 0.67 0.934423
Target:  5'- uGACACAGUuugacaugUGUCggguagACACC-ACcGCCCa -3'
miRNA:   3'- uCUGUGUCG--------ACAG------UGUGGuUGuCGGG- -5'
13311 3' -53.5 NC_003409.1 + 22435 0.67 0.934423
Target:  5'- -cACAUAGCUcaaUCACgGCCAcccagaagaGCAGCCCc -3'
miRNA:   3'- ucUGUGUCGAc--AGUG-UGGU---------UGUCGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.